| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sare_3513 |
|---|
| Symbol | |
|---|
| ID | 5703322 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Salinispora arenicola CNS-205 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009953 |
|---|
| Strand | + |
|---|
| Start bp | 4052393 |
|---|
| End bp | 4054177 |
|---|
| Gene Length | 1785 bp |
|---|
| Protein Length | 594 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 72% |
|---|
| IMG OID | 641272940 |
|---|
| Product | diguanylate cyclase/phosphodiesterase |
|---|
| Protein accession | YP_001538306 |
|---|
| Protein GI | 159039053 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
|---|
| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 14 |
|---|
| Plasmid unclonability p-value | 0.488894 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 7 |
|---|
| Fosmid unclonability p-value | 0.00977905 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | GTGTGGGGCG GATCGGTGGC TAAGCCGGCC ACCGCGATCC AGCCGACCGC TGCCAAGACG
CCGGCCAGCT CGGGCATGGC GGTCTTCGCC CGGGAGTGGG CGAATGCGGT AACCGGCACG
AGCTACCTAC CGATGACCCA GGCACAGCTC ACCGGGCTAC TCAGCCGCCT CGCCGGGCAG
TTGGCGGCGG CCCTGCTCGC CGAGCCGTTC GACCTGCGAG CCGGCCAGCA GGTCGGCACC
GAACTGGTGA ACGCACACAT CGCCTCCGCC GAGGCGTTGG GGCGGACTGT CGAGGTCGTC
CAGCTACGCC TGGTACGCGA TCTGGGCCTG GTTGCCGAGG ACGTGGAGGA CCGGATGGCC
CGGCTGCTCG CCGCCGTGGC CACCGGCTAC GCACGGGCGC TGCGCGACCG CACGTTGGAC
GAGCAGGAGT CGATCCGACG GGCCGCGATG GCTGAGCGCA CGAAGGCCGA ACAGGCACTG
CGGGCCAGCG AGGCCCGTTT TCGGCACCAG GCCACCCACG ATCCGCTCAC CGATCTGCCG
AACCGAAACC TCTTCACCGA ACGGCTCACC GCGGCGGTCG AGGCGCCGGA GCGGGACACG
GACCGGGTCG GCCTCTGCTT CCTCGACCTG GACCAGTTCA AGCGGGTCAA CGACCAGTAC
GGACACCGGG CCGGCGACCG GGTGCTGACG GCGGTGGCGA CCCGACTGCG GGAGGCCCTC
AGCGGGCACC TGGTCGCCCG GCTGGGCGGC GACGCGTTCG TCGTCCTGAT CGAACGCACC
GGCGGTACCC GGGACGTGAT CGCGGTGGCC GAGGCGGCCC TCGCCGCCAT ACACGAACCG
GCTGTGGTGG CCGGTACCGA GGTGGCCGTG CGGACCAGCA TCGGCATCGT GGAACGGAAG
GTCGCGGGCA CCTCCGCGAA CGAGCTGATG CGGGCCGCCG ACTGCACCCT GCACTGGGCC
AAGGCCGCCG GCGGCGGTCG GTGGATGATC TACGACCCTG AACGCGACCG CCGGGAGCTC
ACCCGCCAGG CACTGACCGC GGCGATCCCG ACCGGGCTGG ACCGCGGTGA GTTCTACCTC
GACTACCAGC CGCTGACCTC GCTGCGCGAC GGCCGGCTGC TGGGCGTGGA GGCGCTGGTG
CGCTGGCGGC ATCCGGAGCT GGGTGTGCTG CGCCCGGACC AGTTCATCGG TCTCGCCGAG
GAGACTGGGT TGATCGTCCC GCTCGGTGGG TGGGTACTCG CGGAGGCATG CCGGGTGGCG
GGCAGCTGGT CGGGCACCGG CGGGGAGCCG TTCGTCAGCG TCAACCTGGC CGTGCGGCAG
GTGCACCGGC CGGGTCTGGT GCGGGATGTC CGCGACCTCC TGCGGCACAC CGGGCTGCCG
CCGGAGCGCC TCCAGCTGGA AATCACCGAG AGCGCCATGA TGAGCCCGGC CGAGGAGCCG
GTGCGTGCGC TGCGGATGCT CGCCGACCTC GGTGTCCGCA TCGCCATCGA CGACTTCGGC
ACCGGCTACA GCAACCTGGC GTACCTGCGT GACCTGCCGG TGACCGAGCT GAAGGTGGCC
GGGGAGTTCG TTGCCGGGTT GCGCGCATCG GAGCCCCAGG CGGACGAACG GATCCTCGCG
TCGTTGGTGT CGCTGGCCCA CGCACTGAAC CTGACCGTCA CCGCAGAAGG GGTGGAGACG
GCAGGGCAGG CCGAACGGTT GCGGGCCATC GGCTGCGACG CCGGCCAGGG CTGGCACTTC
GGCCGACCGG AGCCGGCCGA CCGGATCCTG GCCCGGATGG GCTGA
|
|---|
| Protein sequence | MWGGSVAKPA TAIQPTAAKT PASSGMAVFA REWANAVTGT SYLPMTQAQL TGLLSRLAGQ
LAAALLAEPF DLRAGQQVGT ELVNAHIASA EALGRTVEVV QLRLVRDLGL VAEDVEDRMA
RLLAAVATGY ARALRDRTLD EQESIRRAAM AERTKAEQAL RASEARFRHQ ATHDPLTDLP
NRNLFTERLT AAVEAPERDT DRVGLCFLDL DQFKRVNDQY GHRAGDRVLT AVATRLREAL
SGHLVARLGG DAFVVLIERT GGTRDVIAVA EAALAAIHEP AVVAGTEVAV RTSIGIVERK
VAGTSANELM RAADCTLHWA KAAGGGRWMI YDPERDRREL TRQALTAAIP TGLDRGEFYL
DYQPLTSLRD GRLLGVEALV RWRHPELGVL RPDQFIGLAE ETGLIVPLGG WVLAEACRVA
GSWSGTGGEP FVSVNLAVRQ VHRPGLVRDV RDLLRHTGLP PERLQLEITE SAMMSPAEEP
VRALRMLADL GVRIAIDDFG TGYSNLAYLR DLPVTELKVA GEFVAGLRAS EPQADERILA
SLVSLAHALN LTVTAEGVET AGQAERLRAI GCDAGQGWHF GRPEPADRIL ARMG
|
|---|
| |