| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sare_3494 |
|---|
| Symbol | |
|---|
| ID | 5704765 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Salinispora arenicola CNS-205 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009953 |
|---|
| Strand | - |
|---|
| Start bp | 4029680 |
|---|
| End bp | 4030924 |
|---|
| Gene Length | 1245 bp |
|---|
| Protein Length | 414 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 67% |
|---|
| IMG OID | 641272921 |
|---|
| Product | extracellular solute-binding protein |
|---|
| Protein accession | YP_001538287 |
|---|
| Protein GI | 159039034 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG1653] ABC-type sugar transport system, periplasmic component |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 22 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 8 |
|---|
| Fosmid unclonability p-value | 0.0194042 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCGTAGGG CGGCCGTCGC CGCGGTCGGG GCGCTCGCGT TGCTGTCGCC CGCCGCTTGC
GGTGGTGCCG ACAGCGAGGC CGACCAGAAG GATGTGGAGG TCTTCACCTG GTGGGCCGAC
GGGGGTGAGA AGGCCGGACT GGACGGCCTG GTGGCGACCT TCGACGAGCA GTGTGACTAC
TCCTTCGTGA ACGGAGCGGT CGCCGGTGGC GCCGGATCGA ACGCCAAGCA GGTGCTGGCC
TCCCGGCTGC AACAGGGCGA TGCGCCGGAC ACCTTCCAGG CCCACGCCGG TGCCGAACTG
TCGGACTACA TCGCGGCCGG CCAGGTGGAG GATCTCAGCG CCCTGTACGA GGAATGGGGC
CTCACCGAGG CCCTTCCGTC AGGTCTGATC GACAACCTGA GCGTGGACGG CAAGATCTAC
TCGGTGCCGG CGAACATCCA CCGGGCCAAC GTCCTCTGGA CGAACAAGTC GGTGCTCAGC
GATGCCGGCG TCACGGCCGA ACCGACCACG ATGGCGGACT TCCTTGCCGC CCTCGAGACC
CTGAAGGCCA AGGGCGTCAG CGCGCCGCTC GCGATCGGCA AGGACTGGTC CCAGCTGATG
TTGCTGGAGG CGGTCCTGAT CAGTGACCTG GGCCCAGAGG GTTTCAACGG CCTGTGGAAC
GGCGGAACCG ACTGGAACAG CCCCGATGTC GCCAAGGGGC TGGAGAACTA CAAGCAGCTG
CTCAGCTACA CCAACGCGGA TCGGGACACC TACGACTGGA CCGACGCCGG GAAGCTCCTC
ATGGAGGGCA AGGCCGGCTT CTTCCTGATG GGGGACTGGG CTCCGAGTGA CTTCGAGGCC
AAGGGGTTCG CTGACTTCGG CCATGTCGCC TTTCCGGGTA ACGGGGACAC CTTCCAGTGG
CTCGCCGACT CCTTCGTGTT GCCCCAGGGC GCCAAGAACC CCGAGGGCAC CAAGTGCTGG
CTGAAGACCG TCGGCAGCGC CGAGGGACAG CAGGCGTTCA ACATCAAGAA GGGCTCCATC
CCCGCGCGTA CCGACGTCAC CGCGACCGAC TACCCCGCCT ACCAGCAGTC GGCCATCGAG
GCGTGGAAGA CTGCCACGCA GGTGCCGTCC TGCGCACACG GTGCCGCCTG CTCGCAGGGC
GCCGTTGAGG CGGCGAATTC CGCGATCGGC AAGTTCTCCA GCGACCAGGA CGCGGCAGGA
CTGCAGAAGG CGATGGCCGC CGCCGCTGCG CTCGGCAGGA ACTAG
|
|---|
| Protein sequence | MRRAAVAAVG ALALLSPAAC GGADSEADQK DVEVFTWWAD GGEKAGLDGL VATFDEQCDY
SFVNGAVAGG AGSNAKQVLA SRLQQGDAPD TFQAHAGAEL SDYIAAGQVE DLSALYEEWG
LTEALPSGLI DNLSVDGKIY SVPANIHRAN VLWTNKSVLS DAGVTAEPTT MADFLAALET
LKAKGVSAPL AIGKDWSQLM LLEAVLISDL GPEGFNGLWN GGTDWNSPDV AKGLENYKQL
LSYTNADRDT YDWTDAGKLL MEGKAGFFLM GDWAPSDFEA KGFADFGHVA FPGNGDTFQW
LADSFVLPQG AKNPEGTKCW LKTVGSAEGQ QAFNIKKGSI PARTDVTATD YPAYQQSAIE
AWKTATQVPS CAHGAACSQG AVEAANSAIG KFSSDQDAAG LQKAMAAAAA LGRN
|
|---|
| |