| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sare_3427 |
|---|
| Symbol | |
|---|
| ID | 5704108 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Salinispora arenicola CNS-205 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009953 |
|---|
| Strand | - |
|---|
| Start bp | 3954085 |
|---|
| End bp | 3955029 |
|---|
| Gene Length | 945 bp |
|---|
| Protein Length | 314 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 70% |
|---|
| IMG OID | 641272854 |
|---|
| Product | RluA family pseudouridine synthase |
|---|
| Protein accession | YP_001538220 |
|---|
| Protein GI | 159038967 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG0564] Pseudouridylate synthases, 23S RNA-specific |
|---|
| TIGRFAM ID | [TIGR00005] pseudouridine synthase, RluA family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 19 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 9 |
|---|
| Fosmid unclonability p-value | 0.0544491 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACGGCGG CATACGCCCC CGGCGGCGGC CACCGATCGC TGCCGGTTCC GGACGGGCTC
GACGGAATGC GCCTCGACCA GGCCGTCGCA CGGCTCTTCG GGCTCTCCCG GACGTCCGCG
GCGGCCCTGG TCGACGAGGG TGCCGCGCTC GTCGACGGCA CAGTACGGGT CAATTCGTAC
AAGGTCCGCG CGGGAGCCTG GCTGGAGGTG ACGCTGCCGG CACCGGCCGC CCCGCCGGCC
GTCGTGCCGC AGGCGGTGTC CGGCCTCCGC GTCGTGTACG CCGACGACGA CATCGTGGTG
GTGAACAAGC CGGTCGGCGT GGCCGCCCAC CCCAGCCCAG GTTGGAGCGG ACCGACCGTG
ATCGGTGGAC TTGCCGCGAT CGGTCACCGC ATCGCCACCA GCGGTGCCGC CGAGCGGCAG
GGCGTGGTGC ACCGGCTCGA CGTCGGCACC ACCGGGATCA TGGTGGTGGC CAAGAGCGAA
CAGGCATACA CAGGCCTGAA GCGGGCGTTC AAGTACCGCG AGGTGGAGAA GCGCTACCAC
GCCGTGGTGC AGGGCCACCT CGATCCGTTA CGCGGCACCG TCGACGCACC GATCGACCGG
CACCCACACC ACGACTACCG CTGGGCGGTG GTCTCTGGCG GCAAGCCCAG CATCACCCAC
TACGACACCC TTGAGGCGTT CCCGGCGGCC AGCCTGGTGG ACGTACGGCT GGAGACGGGC
CGAACCCACC AGATCCGGGT GCACTTCTCG ACGCTGCGCC ATCCATGTGT GGGCGACCTC
ACGTACGGAG CCGATCCCAC CCTCGCCAGC CGGCTTGGCC TGGATCGGCA GTGGTTGCAC
GCTCGGGAGC TGGCGTTCCG CCATCCCCGT ACGGGGGACG AGGTCCGCTT CGTCAGCAGT
TACCCTGACG ACCTGGACCG CGCTCTGGCA ATCCTGCGGG ACTGA
|
|---|
| Protein sequence | MTAAYAPGGG HRSLPVPDGL DGMRLDQAVA RLFGLSRTSA AALVDEGAAL VDGTVRVNSY
KVRAGAWLEV TLPAPAAPPA VVPQAVSGLR VVYADDDIVV VNKPVGVAAH PSPGWSGPTV
IGGLAAIGHR IATSGAAERQ GVVHRLDVGT TGIMVVAKSE QAYTGLKRAF KYREVEKRYH
AVVQGHLDPL RGTVDAPIDR HPHHDYRWAV VSGGKPSITH YDTLEAFPAA SLVDVRLETG
RTHQIRVHFS TLRHPCVGDL TYGADPTLAS RLGLDRQWLH ARELAFRHPR TGDEVRFVSS
YPDDLDRALA ILRD
|
|---|
| |