| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sare_3395 |
|---|
| Symbol | trpA |
|---|
| ID | 5707839 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Salinispora arenicola CNS-205 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009953 |
|---|
| Strand | - |
|---|
| Start bp | 3924093 |
|---|
| End bp | 3924896 |
|---|
| Gene Length | 804 bp |
|---|
| Protein Length | 267 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 72% |
|---|
| IMG OID | 641272822 |
|---|
| Product | tryptophan synthase subunit alpha |
|---|
| Protein accession | YP_001538188 |
|---|
| Protein GI | 159038935 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0159] Tryptophan synthase alpha chain |
|---|
| TIGRFAM ID | [TIGR00262] tryptophan synthase, alpha subunit |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 22 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 11 |
|---|
| Fosmid unclonability p-value | 0.400111 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGAGCCACA TCGGGGTCGC GTTCGACAAG GCCCGTGCCG AAGGCCGGGC GGTTCTGGTC
GGCTGCATGC CCGCCGGGTT TCCCACCGTC GAGGGCAGCA TCGCCGCGAT GACCGCCATG
GTCGAGGCTG GCGTGGACGT CATCGAGGTG GAGATTCCCT ACTCCGACCC GGTGATGGAC
GGACCGGTCA TCCAACGGGC GAGCGACATC GCACTGGCCG GAGGGGTACG GGTCGCCGAC
ACCCTGCGCA TCATCGAGGC TGTCGCCGCC ACCGGCGTGC CGGTGGTGAC GATGACCTAC
TGGAATCCGG TGGAGCAGTA CGGCGTCGAT GCGTTCGCCC GGGACCTCGC CGCGGCGGGC
GGCACCGGGC TGATCACGCC CGACCTGATT CCCGACGAGG CGCAGGAGTG GCTGGCCGCC
TCGGACGCAC ACGGGCTGGA CCGGACCTTC CTCGTCGCCC CCTCCTCCAC CGACACCCGG
CTGGAGATGA CCGTTGAGCA CTGCCGCGGT TTCGTGTACG CGACCGCGCT CATGGGGGTC
ACGGGAGCCC GCACGCAAGC TTCGGCGGCG GCCCCGGTGC TGGTGTCCCG CGTCCGGGGG
GTCACGGACC TGCCGGTGGG TGTCGGGCTC GGGACCGGCA CCGGGGCACA GGCCAGTACG
GTCGCCGGGT TCGCCGACGG TGTCATCGTC GGTAGCGCCC TGATCCGCTG CCTGCTCGAC
GCCCCGAGCC TGCCGGCGGG CCTGACCGCC CTGCGCGCGT TGAGTGCCGA ACTCGCCGCA
GGCGTCCGTA CCCCCGCCCA CTGA
|
|---|
| Protein sequence | MSHIGVAFDK ARAEGRAVLV GCMPAGFPTV EGSIAAMTAM VEAGVDVIEV EIPYSDPVMD
GPVIQRASDI ALAGGVRVAD TLRIIEAVAA TGVPVVTMTY WNPVEQYGVD AFARDLAAAG
GTGLITPDLI PDEAQEWLAA SDAHGLDRTF LVAPSSTDTR LEMTVEHCRG FVYATALMGV
TGARTQASAA APVLVSRVRG VTDLPVGVGL GTGTGAQAST VAGFADGVIV GSALIRCLLD
APSLPAGLTA LRALSAELAA GVRTPAH
|
|---|
| |