Gene Sare_3126 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSare_3126 
Symbol 
ID5706370 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSalinispora arenicola CNS-205 
KingdomBacteria 
Replicon accessionNC_009953 
Strand
Start bp3554526 
End bp3555413 
Gene Length888 bp 
Protein Length295 aa 
Translation table11 
GC content68% 
IMG OID641272558 
ProductECF subfamily RNA polymerase sigma-24 factor 
Protein accessionYP_001537925 
Protein GI159038672 
COG category[K] Transcription 
COG ID[COG1595] DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog 
TIGRFAM ID[TIGR02937] RNA polymerase sigma factor, sigma-70 family 


Plasmid Coverage information

Num covering plasmid clones19 
Plasmid unclonability p-value0.956754 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.000770913 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
ATGGATCGGG TGGTGGAGAC AGTGGTAGGG GCTGCGCATG AGGCACCCTT CGTGAAGCAC 
CGTGGCCTGT TGTACGCGGT CGCGTACCGG ACGCTCGGCA GCGCCAAGGA AGCCGAGGAC
GTCGTGCAGG AGGCCTGGCT GCGGTGGAGT CGTGTCGATC CGGCCACCGT CGTGGACGCC
GAGGCGTTCC TGGTTCGAGT GACCATCCGG CTGGCGATCG ACGAACTGCG CAGTGCCCGG
GTGCGGCGTG AGGCGTACCT CGGTCCGTGG CTACCGGAGC CCATCCTCAC CCGGCCGGAC
ATCGCCGACG GCGTTCTCCT CGCCGACTCC GTCTCCACCG CGCTGCTGCT CGTCCTGGAG
ACGCTGTCGC CCCTGGAACG TGCGGTTTTC GTGTTGCGGG AGGCCTTCGG ATATCCGTAC
GGCGAGATTG CGCAGTTCCT GGGACGCGGC GAGCCGGCAG TACGTCAGCT TGCGCACCGG
GCCCGGAAGG CGGTGGAGAA CCGCCGCCAC CGATATGACA GCGACCCGGT GACCCGACAG
CAGGTGACCG AGCGATTCCT GGCCGCCTGT TCCGGTGGCG ACATCACCGC ACTGGTCGGC
GTACTGGCAC CGAACGTGAC GATGGTCAGC GACGGCGGCG GCTTCACGGG TGCGCCGCGC
AAGCTCATCC ACGGTTCGGA CCTCGTGGCG CGCGCCATCG TCGTGCTCTC CCGGCAGCAG
CCGGTCGGTT CGACAGGCGC GATACTGCAC CTCAACGGTG GCCCCGGTGT CGTGGTGCAC
TGCGACGGAA CGACCGTGCT CGCGATGACC CTGCACCTGG TGGAGGGGCT GGTCCAGACC
CTCCATGTGG TCAGTAACCC GCAGAAGCTG ACCGGGATAG CACTGTGA
 
Protein sequence
MDRVVETVVG AAHEAPFVKH RGLLYAVAYR TLGSAKEAED VVQEAWLRWS RVDPATVVDA 
EAFLVRVTIR LAIDELRSAR VRREAYLGPW LPEPILTRPD IADGVLLADS VSTALLLVLE
TLSPLERAVF VLREAFGYPY GEIAQFLGRG EPAVRQLAHR ARKAVENRRH RYDSDPVTRQ
QVTERFLAAC SGGDITALVG VLAPNVTMVS DGGGFTGAPR KLIHGSDLVA RAIVVLSRQQ
PVGSTGAILH LNGGPGVVVH CDGTTVLAMT LHLVEGLVQT LHVVSNPQKL TGIAL