Gene Sare_2896 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSare_2896 
Symbol 
ID5706416 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSalinispora arenicola CNS-205 
KingdomBacteria 
Replicon accessionNC_009953 
Strand
Start bp3279355 
End bp3281523 
Gene Length2169 bp 
Protein Length722 aa 
Translation table11 
GC content67% 
IMG OID641272345 
ProductAlpha-amylase 
Protein accessionYP_001537713 
Protein GI159038460 
COG category[G] Carbohydrate transport and metabolism 
COG ID[COG0366] Glycosidases 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones20 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones11 
Fosmid unclonability p-value0.578872 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGAATCCG CGAAACCACA CCCGATTGGC CGCACCGGTC GGCTGTTGCT GGCCGCCGCA 
ATGGTGGCGG TCGGTGGCAC GGCGGTCGTC ACCACCGCGA TCACCGCTAC CTCCGCCCGC
GCCGCCGTCG TCCTGAACGA CAGTGAGGTG ACCGCCAACC TGTGGGAGTG GAACTGGAAC
TCGGTCGCCG CCGCCTGCAC CGACCACCTC GGCCCCGCCG GATACGGTGC GGTGCAGGTG
GCCCCGCCGC AGGAGTCGGT CCGCCTACCC AACAGCAACG ACGGGACGCA CCCCTGGTAT
GAGGTCTACC AGCCGGTGTC GTACCAGCTG GAGAGCCGGT TCGGCAGCCG CCAGCAGTTC
GCCGGGATGG TCACCACCTG CCACGAGGCG GGCGTGCGGG TCTACGTCGA CACGGTGGTC
AACCACATGG CCGGAACCAA CAACCCGCAG GGGACGCGTG GGTACGCCGG CACGGAGTTC
TCGGGCTACG ACTACCCCGC GGTGCCCTAC GGTGCGGGGG ACTTCCACCG CCCGGGCGAC
AACTGCCCGA CCGACGGCTC CATCAACGAC TGGGACAACG AGGCCCAGGT GACCAGCTGC
GAACTGCTGT CCCTGGCGGA TCTCTACACC GAGAAGGAAT CCGTCCGGAA CAAGATCGCC
AGCTACCTGA ACGACCTGAT CGGTCTCGGT GTCGACGGCT TCCGGGTGGA TGCGGTCAAG
CACATCCGGA AGGACGACTT CGCGGCGATC CTCGGCAAGC TGAACAACAC CGTCGTGGAA
GGGCGACGCC CCTACGTTGC CCAGGAGATC TTCGACGGTG CCAGCAATCC CGCCCTCCAG
GCCCGCGCGT TCATCGGCAA CGGTGACGTA CTCGACTTCG CCTACGCCAA GGGCATCCGT
TCGGCCTTCC AGGGCTCCAT CGCCACGCTG GCGAACATCC CGAACTGGAA CCTCGACGCA
CCCAGCGCCA ACGTCTTCGC GATGGTCACC AACCATGACC TTGAGCGCGA CGGTGTGGTG
TTGTCCTACA AGGACGGCAC CGACTACGTG CTCGCCAACT ACTTTGCCCT GGCCTACCCG
CACGGCAGGC CGTCGGTGTA CGACAGCTTC ACCTGGTCGG ACCGCAACCA GTCCCCGCCG
CACAACGGCG GCGGGTACGT CACCGACACG GTATGCGGCG GGACCTGGAA CTGCCTGAGC
CAGACCACCG GTATCAAGGG CATGGTGGGT TGGGCCAACG CCGCGCGTCC GGTCCAGACC
ATCGCCGACT TCACCGTGGT CAACGACAAC GTGATCGGCT TTCACCGGGG CGACCGGGCC
TGGATCGGCA TCAACGACTC CGGCAGCGCC GTCAGCGCCA CCTTTACCAC CGGCCTCACC
GACGGCGACT ACTGCGATGT CATCTCCGGG TCCGTCACCA GTAGCGGTTG CAGCGGCGGT
ACGGTGACCG TCTCCGGCGG CCGGGCCACG GTGACCATCC CGGCGAACAA CGCCCTCGCC
GTGCATGTCA ACGCCCGGCC CGGCGCGACC CCGTCGCCGA CGATCAGCCC CACCGGTGAC
CCCACCGACC GGATCGCCAC GACCTTCACC GTCCACGCGA CACCCGGCGC CGACCAGGAG
CTCCACGTCG TCGGCAGCAT TCCCGAACTG GGCTCCTGGG CCCCGGCCGA TGCCGTGCGG
TTGATCCCGC AGGGCGGCAA CACCTACCGC GGCACGATCG ACCTACCTCC GTCGACCCAG
GTCGAGTACA AGTTCATCAA GGTGACCGCC GCGGGTGGGG TGACCTGGGA GTCCGGGGCG
AACCGGAGCT TGACCACCCC CGTCACCGGT ACGCACGCGG TGACCGAGAC CTTCCGGGGC
GACTCGGTGC CGGGCTCGGC GATCGCCGCT TCGTTCAACG CCACTGTCAC CACCTTCTTC
GGCCAGAACG TCTTCGTCGT CGGCAACGTC GCGGAGTTGG GTAGCTGGAA CCCGGACGAG
GCCGTCGCGC TCTCCGCGGC CGACTACCCG GTCTGGCGGG CCACGGTGAA CCTGCCCTCG
AACACCGCTA TCGAGTACAA GTACCTCAAA AAGAATCCGG ACGGGTTCGT GACCTGGGAG
TCCGGGGCGA ACCGGAGCTT CACCACTCCG CCCACCGGAA CCCATACGAG CACCGACACC
TGGCGCTAG
 
Protein sequence
MESAKPHPIG RTGRLLLAAA MVAVGGTAVV TTAITATSAR AAVVLNDSEV TANLWEWNWN 
SVAAACTDHL GPAGYGAVQV APPQESVRLP NSNDGTHPWY EVYQPVSYQL ESRFGSRQQF
AGMVTTCHEA GVRVYVDTVV NHMAGTNNPQ GTRGYAGTEF SGYDYPAVPY GAGDFHRPGD
NCPTDGSIND WDNEAQVTSC ELLSLADLYT EKESVRNKIA SYLNDLIGLG VDGFRVDAVK
HIRKDDFAAI LGKLNNTVVE GRRPYVAQEI FDGASNPALQ ARAFIGNGDV LDFAYAKGIR
SAFQGSIATL ANIPNWNLDA PSANVFAMVT NHDLERDGVV LSYKDGTDYV LANYFALAYP
HGRPSVYDSF TWSDRNQSPP HNGGGYVTDT VCGGTWNCLS QTTGIKGMVG WANAARPVQT
IADFTVVNDN VIGFHRGDRA WIGINDSGSA VSATFTTGLT DGDYCDVISG SVTSSGCSGG
TVTVSGGRAT VTIPANNALA VHVNARPGAT PSPTISPTGD PTDRIATTFT VHATPGADQE
LHVVGSIPEL GSWAPADAVR LIPQGGNTYR GTIDLPPSTQ VEYKFIKVTA AGGVTWESGA
NRSLTTPVTG THAVTETFRG DSVPGSAIAA SFNATVTTFF GQNVFVVGNV AELGSWNPDE
AVALSAADYP VWRATVNLPS NTAIEYKYLK KNPDGFVTWE SGANRSFTTP PTGTHTSTDT
WR