| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sare_2785 |
|---|
| Symbol | |
|---|
| ID | 5707864 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Salinispora arenicola CNS-205 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009953 |
|---|
| Strand | + |
|---|
| Start bp | 3167112 |
|---|
| End bp | 3167678 |
|---|
| Gene Length | 567 bp |
|---|
| Protein Length | 188 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 72% |
|---|
| IMG OID | 641272241 |
|---|
| Product | ECF subfamily RNA polymerase sigma-24 factor |
|---|
| Protein accession | YP_001537611 |
|---|
| Protein GI | 159038358 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG1595] DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog |
|---|
| TIGRFAM ID | [TIGR02937] RNA polymerase sigma factor, sigma-70 family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 17 |
|---|
| Plasmid unclonability p-value | 0.228174 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 4 |
|---|
| Fosmid unclonability p-value | 0.00013029 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | decreased coverage |
|---|
| |
Sequence |
| Gene sequence | GTGACCGACG ACACCGAAGT CACCTCGTGG GCTCTCGAGG CGGGACGCGG TGATCGCGAT
GCCGCCGCCG CCTTCGTCCG GGCGACCCAG CAGCAGGTCC GACGGTTCCT CGCCGCCCTG
GTCTCTCCGG TCGAAGCGGA CGACCTGGCG CAGGAGACGT ACCTGCGCGC GCTGCGGTCG
CTCCCCTCGT TCGCGGGCCG CTCCTCAGCG CGCACCTGGT TGTTCAGCAT CGCCCGACGG
GTCGCGGTGG ACCATGTCCG GGCCGCCACG TCACGCCCGC GGACGATCCC CATGGCGGAC
TCCCACGACG TCGCCGACGC CGACGGCAGC GGCTTCGACC GGCAGGTCGC CCTGGAACAG
CTCATCGCGG CGCTGCCGGC CGACCGCAGG GAGGCATTCG TCGTCACCCA GGTACTCGGC
CTGTCCTACG CCGAGGCGGC GGAGGTGTGC GGCTGCCCGG TCGGAACGAT CAGATCGCGG
GTGTTCCGGG CTCGGGAGGA CCTGGTTGTC GCGCTGGAGA CGCGCTCCGG CGGGTCGTCC
GACACCCGTG ACACCGCGGT GAGCTGA
|
|---|
| Protein sequence | MTDDTEVTSW ALEAGRGDRD AAAAFVRATQ QQVRRFLAAL VSPVEADDLA QETYLRALRS
LPSFAGRSSA RTWLFSIARR VAVDHVRAAT SRPRTIPMAD SHDVADADGS GFDRQVALEQ
LIAALPADRR EAFVVTQVLG LSYAEAAEVC GCPVGTIRSR VFRAREDLVV ALETRSGGSS
DTRDTAVS
|
|---|
| |