| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sare_2479 |
|---|
| Symbol | |
|---|
| ID | 5706084 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Salinispora arenicola CNS-205 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009953 |
|---|
| Strand | - |
|---|
| Start bp | 2836942 |
|---|
| End bp | 2837670 |
|---|
| Gene Length | 729 bp |
|---|
| Protein Length | 242 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 72% |
|---|
| IMG OID | 641271943 |
|---|
| Product | short-chain dehydrogenase/reductase SDR |
|---|
| Protein accession | YP_001537313 |
|---|
| Protein GI | 159038060 |
|---|
| COG category | [I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism
[R] General function prediction only |
|---|
| COG ID | [COG1028] Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 14 |
|---|
| Plasmid unclonability p-value | 0.0860852 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 11 |
|---|
| Fosmid unclonability p-value | 0.421105 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGAATCCCG TAACCGTCAT CACCGGCGGC AGCCGCGGAA TCGGCGCCGC CACCGCCCGC
CGCCTCGCCC GCGCCGGCCA CCACATCGCC TTCTCCTACC AACGCGACCG CGCCGCCGCC
GACACCGTGC TCGCCGAGCT ACACGCCACC GGAACCACCG CCGTCGCCGT ACCCGTCGAC
ACCCGCGACC CCGACCAGAT CGCCACCCTG TTCGCCGCCG CAGCCGACCT CGGCGACCTC
ACCGGCCTGG TCAACAACGC CGGCGTCACC AGCCCCATCG GCCCCTTCGT CGACCTCGAC
CCCACCGACC TACGCCACGT CGTCGACGTC AACCTCATCG GCTACATACT CGCCGCCCAG
CAGGCCGCCC GCCAGATGCC CGCCGGCGGC GCCATCGTCA ACATCTCCTC CGCCGCCGCC
ACCCTCGGCT CACCCGGCGA ATACGTCCAC TACGCCGCCG TCAAAGCCGG CACCGACGCC
CTCACCATCG GCCTGGCCAA GGAACTCGCC CCCCGCGGCA TCCGCGTCAA CGCCGTCGCC
CCCGGCATCG TCCGCACCGA CATCCACACC CTGTCCGGCC AACCCGATCG GCCCGAGCAA
ACCGCCTCCC GCATCCCACT CGGGCGTCCC GGCGAACCCG ACGAAGTCGC TGCCGCCATC
ACCTGGCTAC TCGGACCCGA CGCCAGCTAC ACCACCGGCA CCATCCTTCG CGTCAGCGGC
GGCCTCTGA
|
|---|
| Protein sequence | MNPVTVITGG SRGIGAATAR RLARAGHHIA FSYQRDRAAA DTVLAELHAT GTTAVAVPVD
TRDPDQIATL FAAAADLGDL TGLVNNAGVT SPIGPFVDLD PTDLRHVVDV NLIGYILAAQ
QAARQMPAGG AIVNISSAAA TLGSPGEYVH YAAVKAGTDA LTIGLAKELA PRGIRVNAVA
PGIVRTDIHT LSGQPDRPEQ TASRIPLGRP GEPDEVAAAI TWLLGPDASY TTGTILRVSG
GL
|
|---|
| |