| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sare_2358 |
|---|
| Symbol | |
|---|
| ID | 5704990 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Salinispora arenicola CNS-205 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009953 |
|---|
| Strand | + |
|---|
| Start bp | 2712312 |
|---|
| End bp | 2714093 |
|---|
| Gene Length | 1782 bp |
|---|
| Protein Length | 593 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 66% |
|---|
| IMG OID | 641271836 |
|---|
| Product | ATPase central domain-containing protein |
|---|
| Protein accession | YP_001537207 |
|---|
| Protein GI | 159037954 |
|---|
| COG category | [O] Posttranslational modification, protein turnover, chaperones |
|---|
| COG ID | [COG1222] ATP-dependent 26S proteasome regulatory subunit |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 18 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 10 |
|---|
| Fosmid unclonability p-value | 0.164365 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGGCACGCA GCGACGACGC GGACTCGCGC GCCGCACGGT GGGAGAAGGA GGCCCACGAT
CTCTCCACGC AGGTCGCGTT CCTGCAAGAG GAACTCGCTC TGGTGCGGCG CAAGTTGACC
GAAAGCCCCC GACACGTCCG GCAGCTCGAA GAGCGGCTGG CTGCCGCCCA GGCCCAGTTG
GCGCGGCTGA CCGAGAACAA CGAGCGGCTC GTGAGCACCC TCAAGGAGGC TCGGGCGCAG
ATCGTGACGC TCAAGGAGGA GATCGACCGT CTCGCCCAGC CGCCGAGTGG CTACGGGATC
TTCCTGGAGC GGCACGACGA CGGCACGGTG GACGTGTTCA CCGGTGGCCG CAAGCTCCGG
GTGGCCGTCT CACCGTCGCT GGACGTCGCC GAGCTGTGCC GTGGGCAGGA AGTCCTGCTC
AACGACGCGC TCAACATCGT TGACGCGTTC GGCTACGAGC GGGCCGGTGA GGTCGTCATG
CTCAAGGAGG TGCTCGCCGG ACCGGACGGC GCCCCCGGCG ACCGTGCCCT CGTGGTCTCC
CACTCCGACG AGGAACGCGT CGTGCACCTC GCGGAGACCC TGATCGGCGC CGCGATCCGG
GCGGGAGACT CGCTCATGAT CGAGCCCCGC TCGGCGTACG CGTACGAGCG GATTCCGAAG
AGTGAGGTCG AGGAACTGGT CCTGGAGGAG GTGCCGGACG TCGACTACAC CGACATCGGC
GGCCTCCACG CGCAGATCGA GCAGATCCGC GACGCGGTGG AGCTGCCGTT CCTGCACGCT
GATCTGTTCC GCGAGCACCA GCTCCGGCCG CCGAAGGGCA TCCTGCTCTA CGGACCACCC
GGCTGTGGTA AGACCCTGAT CGCCAAGGCG GTGGCCAACT CGCTGGCGAA GAAGATCGCC
GAGCGGCGCG GCGAGGAGAA GCACACCAGC TACTTCCTCA ACATCAAGGG TCCTGAGCTG
CTCAACAAGT ACGTCGGCGA GACCGAGCGG CACATCCGGC TGATTTTCCA GCGCGCGCGG
GAGAAGGCCG GTGAGGGCAC GCCGGTCATC GTGTTCTTCG ACGAGATGGA CTCGGTGTTC
CGCACCCGCG GTTCCGGCGT CTCGTCGGAT GTGGAGAACA CCATCGTCCC GCAGTTGCTC
AGCGAGATCG ACGGCGTCGA GGGCCTGGAG AACGTCATCG TCATCGGCGC CTCCAATCGG
GAGGACATGA TTGACCCGGC GATCCTGCGG CCGGGCCGGC TTGACGTCAA AATCAAGATT
GAGAGGCCGG ACGCCGAGGC GGCGAAGGAC ATCTTCTCCA AGTACATCCT CTCCGGACTG
CCCCTGCATC CGGATGACCT GGCCGAGCAC GGTGGTGAGC CACAGGCCAC CGTGGCGGCG
ATGATCGACG CGGTCGTCCT GCGGATGTAC TCGGAGACCG AGGAGAACCG CTTCCTCGAG
GTCACCTACG CCAACGGCGA CAAGGATGTC CTCTACTTCA AGGACTTCAA CTCCGGGGCG
ATGATCCAGA ACATCGTGGA CCGGGGCAAG AAGATGGCCA TCAAGGAGTT TCTCACCTCC
GCCCGCAAGG GCCTGCGGCT GCAACACCTC CTCGACGCCT GCGTCGACGA GTTCCGGGAG
AACGAGGACC TGCCCAACAC CACCAACCCT GACGACTGGG CGCGCATCTC CGGCAAGAAG
GGCGAGCGGA TCGTCTACAT CCGCACGCTC GTCTCCGGCG GCAAGGGCGC CGACGCGGGC
CGGTCCATCG AGACCGCCAG CAACACCGGT CAGTACCTCT GA
|
|---|
| Protein sequence | MARSDDADSR AARWEKEAHD LSTQVAFLQE ELALVRRKLT ESPRHVRQLE ERLAAAQAQL
ARLTENNERL VSTLKEARAQ IVTLKEEIDR LAQPPSGYGI FLERHDDGTV DVFTGGRKLR
VAVSPSLDVA ELCRGQEVLL NDALNIVDAF GYERAGEVVM LKEVLAGPDG APGDRALVVS
HSDEERVVHL AETLIGAAIR AGDSLMIEPR SAYAYERIPK SEVEELVLEE VPDVDYTDIG
GLHAQIEQIR DAVELPFLHA DLFREHQLRP PKGILLYGPP GCGKTLIAKA VANSLAKKIA
ERRGEEKHTS YFLNIKGPEL LNKYVGETER HIRLIFQRAR EKAGEGTPVI VFFDEMDSVF
RTRGSGVSSD VENTIVPQLL SEIDGVEGLE NVIVIGASNR EDMIDPAILR PGRLDVKIKI
ERPDAEAAKD IFSKYILSGL PLHPDDLAEH GGEPQATVAA MIDAVVLRMY SETEENRFLE
VTYANGDKDV LYFKDFNSGA MIQNIVDRGK KMAIKEFLTS ARKGLRLQHL LDACVDEFRE
NEDLPNTTNP DDWARISGKK GERIVYIRTL VSGGKGADAG RSIETASNTG QYL
|
|---|
| |