| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sare_2348 |
|---|
| Symbol | |
|---|
| ID | 5706932 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Salinispora arenicola CNS-205 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009953 |
|---|
| Strand | - |
|---|
| Start bp | 2701238 |
|---|
| End bp | 2702704 |
|---|
| Gene Length | 1467 bp |
|---|
| Protein Length | 488 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 68% |
|---|
| IMG OID | 641271826 |
|---|
| Product | major facilitator transporter |
|---|
| Protein accession | YP_001537197 |
|---|
| Protein GI | 159037944 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG2814] Arabinose efflux permease |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 0.720535 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 11 |
|---|
| Fosmid unclonability p-value | 0.469317 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGACCGCCG AGAACCACAA CGGGGAGTTA CCTCGGACGG GGTCGGGTCG TCCGGTGCCG
CGGGGACCGG TGGTGGTCGT AGGTGTGCTG GTGGCCTTCA TCATCGGGCT CAACATCGCC
CTGTTGGTGA TCGTCTTGCC GACGATCCGG AGTACGCTCG GACTGGATTC GAGTAGTCAG
CAATGGCTGA TCTCCGCGTT CTACCTCGCG TTCGGCCTGG TGTTGGTGCC GGCCGGTCGA
TTCGGTGATG TACGCGGCCG GCGCGCCATC TTCGTGACCG GCGTGACGGC GTTCGTGGTG
GCGAGCGGGG TCGCGGCCTT CGCCTCACAC GGGGCGTGGC TGATCGGCGC CCGGCTGGTG
CAGGGTGTTG GCGTCGGGCT GGCGTTCGCG CAGGTCTTCG GAACGATACA GCGGCTGTAT
TCCGCCCGGG AGCGGGGACT TCCGTTCGGA GCGGTCATCG CGGGCGTCAG CGTCGCCCGC
GTGTCCGGTC CGGTGCTCGG CGGTGGACTG GTCGCCCTCG GCGGTGCCGA GTGGGGCTGG
CGGTGGTCCT TTCTGGTCAA TGTGCCGGTG GGAATCGTCG TCGCGTTCCT CGGCTGGCGG
TTGTTCCCGG TCGCGGAGCG AGTCGCGCGG CCGAGGATGG ACGTGACGGG GGCCGTCCTG
TTGATGGTCG GGCTGGGCTT GGTGTGGCTG ACGCAGGGCG AGCAGTGGCC GGGGTGGGTT
CGCTGGACAC TCCTGCCCGC GGGGTTGGTG CTGCTGGTCG GATTCGTGTT CTGGGAATAC
CGGTACACCC GTCGGGGTGA GCCGATGTTC ACCATAAGAT TGTTCCGGTT TCGGTCGTTC
GCGGCGGGGA TGGTCATCGC CACGTTCTAC ACCGCCGGCT ACGACGGCAT TTACTACCTG
ATGTCGGAAT ACCTCCAACA TGGGCTCGGG CATAACGAAC TGGTGACCGG CATCGCGCTC
ACCCCGCTGG CGCTGGGAGT AGCCGTCAGT TCGGTGATCG GTGGCGCCAA GGCGGGGCGG
ATGGGCAGCC GGCTGGTTGT CTCGGGGCTG GTCCTCGTGG CGGTCGGGCT GACCGCGCTG
CTGGTCGCCG ACCTCTTCCT TCCCGGCCCG GACTCCCCAC ACGCGGCCAC GCTGCCGCTA
CTGCTGGCCG GACTGGGTGG CGGACTGGTC ACCTCAGGGG TGGGCGGTGG CCTGGTGAAC
GCGCCGAACC TGACAGTGGC CCTGTCCCCC GTGCCACAGA CCGAGGGCGG AAGTGCTGGC
GGGATGCTCG AGACCGGGCA GGCGTTCGGT GGCGGTCTGG GAGTTGGTGT CGTCGGCACG
GTCATCTTCG CGAGTCTCGA CCAGACGGAC AACTGGTTGA CCGCCTTCCG GCTACCCGTT
CTGGTCATCG TCGGACTCTT CGTCGTCGCG CTGGCAGCCG CCCTGATCAG CCTGTTCTTC
CCGGACCGGG CCAGGCCACG GTCATGA
|
|---|
| Protein sequence | MTAENHNGEL PRTGSGRPVP RGPVVVVGVL VAFIIGLNIA LLVIVLPTIR STLGLDSSSQ
QWLISAFYLA FGLVLVPAGR FGDVRGRRAI FVTGVTAFVV ASGVAAFASH GAWLIGARLV
QGVGVGLAFA QVFGTIQRLY SARERGLPFG AVIAGVSVAR VSGPVLGGGL VALGGAEWGW
RWSFLVNVPV GIVVAFLGWR LFPVAERVAR PRMDVTGAVL LMVGLGLVWL TQGEQWPGWV
RWTLLPAGLV LLVGFVFWEY RYTRRGEPMF TIRLFRFRSF AAGMVIATFY TAGYDGIYYL
MSEYLQHGLG HNELVTGIAL TPLALGVAVS SVIGGAKAGR MGSRLVVSGL VLVAVGLTAL
LVADLFLPGP DSPHAATLPL LLAGLGGGLV TSGVGGGLVN APNLTVALSP VPQTEGGSAG
GMLETGQAFG GGLGVGVVGT VIFASLDQTD NWLTAFRLPV LVIVGLFVVA LAAALISLFF
PDRARPRS
|
|---|
| |