| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sare_1919 |
|---|
| Symbol | |
|---|
| ID | 5708271 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Salinispora arenicola CNS-205 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009953 |
|---|
| Strand | + |
|---|
| Start bp | 2215103 |
|---|
| End bp | 2215873 |
|---|
| Gene Length | 771 bp |
|---|
| Protein Length | 256 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 69% |
|---|
| IMG OID | 641271423 |
|---|
| Product | pseudouridine synthase |
|---|
| Protein accession | YP_001536795 |
|---|
| Protein GI | 159037542 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG1187] 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases |
|---|
| TIGRFAM ID | [TIGR00093] pseudouridine synthase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 22 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 6 |
|---|
| Fosmid unclonability p-value | 0.00118075 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGCCTCGCG ATAACCGAGC CCCGAAGCCC GACGCGCCCA GCTACACCGG CCCGGAACGC
CTGCAGAAGG TGCTTGCCGC CGCCGGAGTC GGATCCCGCC GCGCCTGCGA GGATCTGATC
TTCCGCCGGC GGGTGACGGT GAACGGCCGG ATCGCCCAGC TCGGAGACCG GGCCGACCCG
ACCTCCGACA CCATCCACGT CGACGGCGAG CGTCTCCAGG CCGACACCCG CCTGGTCTAC
CTGGCCATGA ACAAACCCCG GGGCGTGGTC TCCACCATGG CCGACGAGAA GGGCCGCACC
GCCATCGCCG ACTTCCTCGG CAACCGTGTG CAGGAGCGGG TCTACCACGT CGGACGGCTC
GACGCGGACA GCGAGGGCCT ACTGCTGCTC ACCAACGACG GCACCCTCGC GCACCGACTC
ACACACCCCT CCTACGGAGT GCCAAAGACA TACCTGTGCG AAGTATCCGG CCCGATTCCG
CGGACCCTGG GTCGGCGCCT CGCCGCCGGC ATCGAACTGA CCGACGGGCC CGCGACGGTA
GACGCATTCC GCGTGGTGGA CACACTCGGA AGAACAGCCC AGGTGGAGGT AACCCTGCAC
GAAGGGCGCA AGCACATCGT TCGACGCCTG TTCGACGCGG TCGGCCACCC GGTGTCACGG
CTGGTGCGTA CCTCGATCGG TCCGATCCGA CTCGGAGACC TGCGTGCCGG GCGAACCCGT
CGCCTGACCA ACGCGGAGGT CGCCGCCCTG TTCAAAGCGG TCGGCGACTG A
|
|---|
| Protein sequence | MPRDNRAPKP DAPSYTGPER LQKVLAAAGV GSRRACEDLI FRRRVTVNGR IAQLGDRADP
TSDTIHVDGE RLQADTRLVY LAMNKPRGVV STMADEKGRT AIADFLGNRV QERVYHVGRL
DADSEGLLLL TNDGTLAHRL THPSYGVPKT YLCEVSGPIP RTLGRRLAAG IELTDGPATV
DAFRVVDTLG RTAQVEVTLH EGRKHIVRRL FDAVGHPVSR LVRTSIGPIR LGDLRAGRTR
RLTNAEVAAL FKAVGD
|
|---|
| |