Gene Sare_1861 details

Gene Information

• Locus tag: Sare_1861
• Symbol: def
• ID: 5704819
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Salinispora arenicola CNS-205
• Kingdom: Bacteria
• Replicon accession: NC_009953
• Strand: +
• Start bp: 2147851
• End bp: 2148411
• Gene Length: 561 bp
• Protein Length: 186 aa
• Translation table: 11
• GC content: 70%
• IMG OID: 641271362
• Product: peptide deformylase
• Protein accession: YP_001536737
• Protein GI: 159037484
• COG category: [J] Translation, ribosomal structure and biogenesis
• COG ID: [COG0242] N-formylmethionyl-tRNA deformylase
• TIGRFAM ID: [TIGR00079] peptide deformylase

Plasmid Coverage information

• Num covering plasmid clones: 17
• Plasmid unclonability p-value: 0.239464
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: 15
• Fosmid unclonability p-value: 1
• Fosmid Hitchhiker: No
• Fosmid clonability: normal

Sequence

Gene sequence

GTGACCGTCC AGCCCATCCG CCTGTTCGGT GACCCGGTGC TGCGCACGCC GGCCGACCCG 
GTGGTCGACT TCGATGTCGA GCTGCGCAAG CTCGTCGCCG ACCTGACCGA CACGATGCGT 
GAGCAGAACG GCGCCGGTCT CGCCGCACCG CAGCTCGGCG TGGGTCTGCG GGTGTTCGCC 
TTCGACGTCG ACGACGTGAT CGGCCACCTG GTCAACCCGG TGCTGGAGTT CCCCGACGTC 
GAGGAGCAGG ACGGCCCCGA GGGCTGCCTG TCACTGCCGG GGCTCTACTT CGACACGAAG 
CGCCGACAGA ACGTGGTCGC CAGGGGCTTC AACGGACACG GCGACCCGGT GCAGATCGTC 
GGCACGGGGC TGATGGCGCG CTGTGTCCAG CACGAGACCG ACCACCTCGA CGGGGTGCTG 
TTCATCGACC GGCTTGACGC GGCCGGCCGC AAGGAGGCGA TGAAGGCGAT CCGCCAGGCG 
CAGTGGTATG ACCCGGCGGC TCCACCCACG GTGAAGATGA GCCCGCACGC CGGCGGTAGC 
CCGTTCGGCC TCGGACGGTG A 

 

Protein sequence

MTVQPIRLFG DPVLRTPADP VVDFDVELRK LVADLTDTMR EQNGAGLAAP QLGVGLRVFA 
FDVDDVIGHL VNPVLEFPDV EEQDGPEGCL SLPGLYFDTK RRQNVVARGF NGHGDPVQIV 
GTGLMARCVQ HETDHLDGVL FIDRLDAAGR KEAMKAIRQA QWYDPAAPPT VKMSPHAGGS 
PFGLGR