| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sare_1819 |
|---|
| Symbol | alaS |
|---|
| ID | 5706465 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Salinispora arenicola CNS-205 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009953 |
|---|
| Strand | + |
|---|
| Start bp | 2095507 |
|---|
| End bp | 2098185 |
|---|
| Gene Length | 2679 bp |
|---|
| Protein Length | 892 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 70% |
|---|
| IMG OID | 641271321 |
|---|
| Product | alanyl-tRNA synthetase |
|---|
| Protein accession | YP_001536696 |
|---|
| Protein GI | 159037443 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG0013] Alanyl-tRNA synthetase |
|---|
| TIGRFAM ID | [TIGR00344] alanine--tRNA ligase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 11 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 3 |
|---|
| Fosmid unclonability p-value | 0.0000366282 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGAAGACGG CGGAGATCAG GCGGCGGTAC CTCGCGCACT TCGAGGCGAA CGGTCACGCC
GTGGTGCCGT CCGCTCCGCT GCCCGCCATC AGCGACCCGA ACCTCCTGTT CGTCGCCGCC
GGCATGATGC AGTTCGTCCC CTACTTCCTG GGGCAGCAGA CGGCCCCCTA CAAGCGGGCC
GTCAGCGTGC AGAAGTGCCT CCGTACGCCG GACATCGACG AGGTCGGCAA GACCAGCCGG
CACGGCACGT TCTTCCAGAT GAACGGCAAC TTCTCGTTCG GGGACTACTT CAAGGACGAG
GCGATCCCGC TCGCCTGGGA CCTGGCCACC AAGTCGGTTG ACGCCGGGGG TTTCGGGCTT
GACCCGGAGC GGATCTGGCC GACGGTCTAC CTCGACGACG ACGAGGCGTA CGAGGTCTGG
CGGTCGGTCG GCGTCCCGGC GGACCGGATC GTGCGTCGCG GCAAGGCCGA CAACTTCTGG
TCGATGGGCA TCCCCGGCCC GTGCGGACCC TGTTCCGAGC TGTTCTACGA TCGCGGGCCC
GAGTACGGCC TGGAGGGCGG CCCGGCGGTT GACGAGGACC GCTACCTGGA GTTCTGGAAC
CTCGTCTTCA TGCAGTTCGA ACGGGGCCCG GGCACCGGCA AGGAGGACTA CCCGATCCTC
GGTGACCTGC CGGCGAAGAA CATCGACACC GGCATGGGCC TGGAGCGAAT GGCGTCGATC
CTCCAAGGCG TGGACAACCT CTACGAGATC GATGAGGTAC GGCCGATCCT GGACAGGGCC
GCCGAGCTCA CCGGTAAACG GTACGGCGCG CACTCCGGTC ACGTCGCCAG CGAGTCGCAC
CCGGACGACG TCCGGCTGCG GGTCGTCGCC GACCACGTCC GTACCGCCCT GATGTTGATC
GGTGACGGGG TGACGCCGAG TAACGAGGGG CGGGGCTACG TGCTGCGCCG CATCATGCGC
CGGGCGATCC GCTCGATCCG GCTGCTGGGC TGGCAGGAGC GGGCGATGCC CGAACTGCTG
CCGGTGGCCC GCGACTGCAT GTCCCCGTCG TACCCGGAGC TGGCAGCGGA CTTCGGCCGG
ATCGCCGACT ACGCGTACGC GGAGGAGGAC GCCTTCCTGT CCACGTTGCG GGCCGGTACC
ACGATCCTGG ACACCGCCAT CGCCGAAAGC CGGACGGCGG GCCGTCGGGC GATCTCCGGC
GCCCAGGCGT TTCAGCTGCA CGACACGTAC GGCTTCCCGA TCGACCTGAC CCTGGAGATC
GCGAACGAGC AGGGCATGCA GGTCGACGCC GAGGGCTTCC GCCGGCTGAT GGCTGACCAG
CGGGCCCGGG CGAAGGCCGA CGCGCAGGCG CGCAAGACAG GGCACGTGGA CCTGTCCGCG
TACCGGACGG TGCTGGACGA GGGTGGTCCG GTCACCTTCA CCGGCTACCA CGAGGTCTCC
CGTGAGTCGA CGGTTCGGGC GGTGCTCGGC GAGGCTGGCC CACGCGCGGC GGCGGTCGAG
GGTGACACGG TCGAACTGGT GCTCGACACG ACCCCGTTCT ATGCCGAGGG TGGCGGTCAG
CAGCCGGATC TCGGCGTGAT CACGGTTGGC GGCGGCCAGG TCGAGGTCCT CGACGTGCAG
CAGCCGGTGC CGGGGCTGAT CGTCCACCGG GCCCGGGTGC TGCGGGGGGA GGTACGCGCA
GGCGAGACCG GCTTCGCCGA GATCGACGCC AGTCGCCGTC GGGCAATTTC CCGGTCGCAC
ACCGCAACCC ACCTCGTGCA CCAGACCATG CGCAATTTTC TCGGTGAGTC CGCCACCCAG
GCCGGTTCGC TGAACGCACC GGGACGGCTC CGGTTCGACT TCAACACGCC GACCGGAGTG
GCGCCGAGCG TCCTGCGCGA CGTCGAACAA CAGGTCAACG AGGCGCTCCT CGCCGACCTG
GAGGTGCGTG CGTTCGTCAC GTCACTGGCC GAGGCGCGGC GCATCGGCGC GATGGCCCTG
TTCGGCGAGA AGTACGGCGA GCAGGTGCGG GTCGTCGAGG TCGGTGACTA CGCGCGGGAG
TTGTGCGGTG GCACCCACGT CGCCCGTTCC GGTCAACTCG GTCTGGTGAA GATCCTTTCC
GAGTCGTCGA TCGGCTCCGG GGTCCGCCGG GTCGAGGCGT TGGTCGGGAT CGACGCGTTC
AATTTCCTCG CCCGCGAGCA CCTGCTCGTC GCCCGCCTCG CCGAGCTGTA CCGGGTGCCG
TCAGACCAGG TCGCCGACCG GGTGGAGCAG ACCGTCAGCC AGCTGCGTGA CGCGGAGAAG
GAGCTGGAGA AGCTCCGCGC GCAGCTGGTG CTCGGCGGCG CGGCAGCGCT CGCCGCCCAG
GCCACGGAGG TGCGCGGGGT GGCGTACGTC GGTACCGAGG CGCCGGAGGG TGCAAGTGGT
AACGACGTAC GTACCCTGGC CCAGGAGATC CGCGGTCGGA TCGATCCGGC GCGTCCCGCG
GTGGTTGCGG TGGCCGCCCG GTCGAACGGC AAGGCTTCGT TGGTGGTAGC CGTGAACCAG
GCCGCCCGTA GTCGGGGCCT GTCGGCCGCG GATCTGGTCA AGGCGGCCTT CGCCGGCCGC
GGCGGGGGCA GCCCCGAGCT GGCCCAGGGG GGCGGACTGC CGGCAGCGGA GGCACCAGGT
CTGCTTCGCA CCGTCGAGAA CGCGATCGCC GGGGCGTAG
|
|---|
| Protein sequence | MKTAEIRRRY LAHFEANGHA VVPSAPLPAI SDPNLLFVAA GMMQFVPYFL GQQTAPYKRA
VSVQKCLRTP DIDEVGKTSR HGTFFQMNGN FSFGDYFKDE AIPLAWDLAT KSVDAGGFGL
DPERIWPTVY LDDDEAYEVW RSVGVPADRI VRRGKADNFW SMGIPGPCGP CSELFYDRGP
EYGLEGGPAV DEDRYLEFWN LVFMQFERGP GTGKEDYPIL GDLPAKNIDT GMGLERMASI
LQGVDNLYEI DEVRPILDRA AELTGKRYGA HSGHVASESH PDDVRLRVVA DHVRTALMLI
GDGVTPSNEG RGYVLRRIMR RAIRSIRLLG WQERAMPELL PVARDCMSPS YPELAADFGR
IADYAYAEED AFLSTLRAGT TILDTAIAES RTAGRRAISG AQAFQLHDTY GFPIDLTLEI
ANEQGMQVDA EGFRRLMADQ RARAKADAQA RKTGHVDLSA YRTVLDEGGP VTFTGYHEVS
RESTVRAVLG EAGPRAAAVE GDTVELVLDT TPFYAEGGGQ QPDLGVITVG GGQVEVLDVQ
QPVPGLIVHR ARVLRGEVRA GETGFAEIDA SRRRAISRSH TATHLVHQTM RNFLGESATQ
AGSLNAPGRL RFDFNTPTGV APSVLRDVEQ QVNEALLADL EVRAFVTSLA EARRIGAMAL
FGEKYGEQVR VVEVGDYARE LCGGTHVARS GQLGLVKILS ESSIGSGVRR VEALVGIDAF
NFLAREHLLV ARLAELYRVP SDQVADRVEQ TVSQLRDAEK ELEKLRAQLV LGGAAALAAQ
ATEVRGVAYV GTEAPEGASG NDVRTLAQEI RGRIDPARPA VVAVAARSNG KASLVVAVNQ
AARSRGLSAA DLVKAAFAGR GGGSPELAQG GGLPAAEAPG LLRTVENAIA GA
|
|---|
| |