| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sare_1802 |
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| Symbol | |
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| ID | 5708385 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Salinispora arenicola CNS-205 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009953 |
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| Strand | + |
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| Start bp | 2074314 |
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| End bp | 2076275 |
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| Gene Length | 1962 bp |
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| Protein Length | 653 aa |
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| Translation table | 11 |
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| GC content | 70% |
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| IMG OID | 641271304 |
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| Product | protein-export membrane protein SecD |
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| Protein accession | YP_001536679 |
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| Protein GI | 159037426 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG0342] Preprotein translocase subunit SecD |
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| TIGRFAM ID | [TIGR00916] protein-export membrane protein, SecD/SecF family
[TIGR01129] protein-export membrane protein SecD |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 0.414477 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 2 |
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| Fosmid unclonability p-value | 0.00000714928 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | decreased coverage |
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Sequence |
| Gene sequence | GTGGCACCAC CTCAGGGACA GATGCGCCCC GGGCGGCAGC TCGCCGTGCT CGGGTTCATC
TTCGTGGTCC TCTACCTTCT GGTGTTCTTC GGAGGCGGCG CGAGTGGCAG CTGGCAGGAC
CGGCTTGAGC CCAAGCTCGG TCTCGACCTG GTTGGCGGCA CCCGGCTGAC GCTGGAGGCG
ACCAACACCG TCGACGGCCA GGCGCCGACC GCGGAGAACC TCGAGGAGGC CCGGCAGATC
ATCGAGAACC GGGTCAACGC GTTCGGGGTC GCCGAGGCCG AGGTGGTCAC CGAGGGCGAC
CGGAACATCG TGATCTCCCT TCCTGGTGAG AACCGTGACC TGACCGAGGT CGGCAGCGCC
GCTGAGCTGC GCTTCCGGAA GGTACTCAAC GCGGCGGACG GGAGTGGTGC GGCAGCGAAC
CCGGCGCCGA GCCCGACCGC CACGCCCTCA GCCTCGCCGT CCGGTTCCCC CTCGCCGTCC
GGTTCCGCTT CGCCCTCCGC GACCGGGAGC GCCTCGCCCG CCCCGTCGGG CAGTGTCCAG
GTCACGGCCT CGCCGAGTGG TGGCCAGGGC GGTGGTGCAC CGGCACCGAC CCCGACCGGT
ACCCCCTCGC CCTCGCCCAG CGTGACGCCC TCGCCGAGCG TGACGCCTTC GCCCAGCGTG
ACGCCTTCGC CGAGCGGCAG CGCCACCCCG GCGCCAGCCA GTGTCGAGGA CCAGCGCGCG
GCGGTCGAGC AGAAGGTGGG CGCGACCGCC TGGGGAGCAG CCAACGCGCT CCAGTCGCCG
GCCGATCTGG CCACCGACCC GTCGCTGGTG GAGAAGCTCA AGCCGTTCGC GTCGCTCGAC
GGCCGTGAGG TCGCGGTGCT GCCGGCCACG ATGCAGTTCA ACGTCCCGCA GATCACCTGC
GACCAGCTCG ACGACCGACC GCCGGCGTCG ATCTCCGCCG CCGACCAGCA GGTCGTCGCC
TGTGAGTACA GCACCGTCAA GTACCTGCTC GACCAGGCCA AGGTCCTGGG CACCGACGTC
GACGACGCCA ACGCCGTGCT CGACCAGACC AGCCAGTGGG TGGTCACCCT GGACTTCACC
AGCTCGGGCC AGGAGAACTG GACCGCGCTG ACCGGCGAGG CGTTCCACAA CGAGGGCCAG
GCATGTGACG CGAACGCGCT CGGGGACACC GGCAAGTGCC GCGTCGCCGT CGTGCTGGAC
AACGAGGTCG TGTCGTCACC GGAGATCCAG GGTGTGCTGA CCGGCAACTC ACAGATCACC
GGTAACTTCA CGCAGCAGGA CGCCAGCGAC CTGGCGAGCA CGTTGCGCTA CGGTGCGTTG
CCGGTGACCT TCGAGCCGCA GGCGCAGCAG AACGTCACCG CGACCCTGGG CGCCAGCCAC
CTGCGGGCCG GGCTGCTTGC GGCCGGTATC GGCATGCTGC TGGTCATCAT CTACTCGTTC
TTCTACTACC GGCTGCTCGG CTCGGTGATC TTCCTGAGCC TGGTGCTGTC GGCGCTGCTC
GTGTTCGGCG CGCTGATCGT GCTTGGCCGG CAGATCGGGT TCACCCTCAC CCTCGCCGGG
ATCGCCGGCA TGATCGTCTC GCTCGGTGTG GCGGCGGACT CCTTCGTCAT CTACTTCGAG
CGGCTCAAGG ACGAGATCCG AGAAGGGCGC AGCCCCCGCA GCGCGGTGTC ACGGGCGTGG
ATCCGCGCCC GTCGGACGAT CATCTCCGCC AACGCGATCA CCCTGATGTC CGCGGTGGTG
CTCTACATCG TCTCGGTCGG CGTGGTCAAG GGCTTCGCGT TCGCGTTGGG CCTCGCCACG
GTCCTCGACC TGGTGGTGGT GTTCCTCTTC CGACACCCGA TCATGACGAT GTTCGCCCGT
ACCCGGGCGT TCCTGTCCCC GCGGGTCAGT GGCCTCGGCC GGGCCCTGCC GGCCCGGACA
GAGTCCGCCC AGCCCCGCAA TCCGCGCGCG AAGGAGGCCT GA
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| Protein sequence | MAPPQGQMRP GRQLAVLGFI FVVLYLLVFF GGGASGSWQD RLEPKLGLDL VGGTRLTLEA
TNTVDGQAPT AENLEEARQI IENRVNAFGV AEAEVVTEGD RNIVISLPGE NRDLTEVGSA
AELRFRKVLN AADGSGAAAN PAPSPTATPS ASPSGSPSPS GSASPSATGS ASPAPSGSVQ
VTASPSGGQG GGAPAPTPTG TPSPSPSVTP SPSVTPSPSV TPSPSGSATP APASVEDQRA
AVEQKVGATA WGAANALQSP ADLATDPSLV EKLKPFASLD GREVAVLPAT MQFNVPQITC
DQLDDRPPAS ISAADQQVVA CEYSTVKYLL DQAKVLGTDV DDANAVLDQT SQWVVTLDFT
SSGQENWTAL TGEAFHNEGQ ACDANALGDT GKCRVAVVLD NEVVSSPEIQ GVLTGNSQIT
GNFTQQDASD LASTLRYGAL PVTFEPQAQQ NVTATLGASH LRAGLLAAGI GMLLVIIYSF
FYYRLLGSVI FLSLVLSALL VFGALIVLGR QIGFTLTLAG IAGMIVSLGV AADSFVIYFE
RLKDEIREGR SPRSAVSRAW IRARRTIISA NAITLMSAVV LYIVSVGVVK GFAFALGLAT
VLDLVVVFLF RHPIMTMFAR TRAFLSPRVS GLGRALPART ESAQPRNPRA KEA
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