| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sare_1708 |
|---|
| Symbol | |
|---|
| ID | 5703262 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Salinispora arenicola CNS-205 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009953 |
|---|
| Strand | + |
|---|
| Start bp | 1975406 |
|---|
| End bp | 1976341 |
|---|
| Gene Length | 936 bp |
|---|
| Protein Length | 311 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 72% |
|---|
| IMG OID | 641271211 |
|---|
| Product | LysR family transcriptional regulator |
|---|
| Protein accession | YP_001536586 |
|---|
| Protein GI | 159037333 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG0583] Transcriptional regulator |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 22 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 6 |
|---|
| Fosmid unclonability p-value | 0.00211796 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGAAGATGC AACTCCATCA ACTCCGGTAC TTCGCGGCGG TCGCAGAAGT GCGACATTTC
ACCCAGGCGG CCGACGTCGT CGGCATAACG CAGCCCTCGT TGAGTAAGCA AATTCACGCC
CTGGAGACGG AGCTCGGCAC CCCGCTCTTC GAGCGGGTAA GGGGCAAGAT CGCGCTCACC
GCCGCGGGCG AGGTACTGCT GCCGTTCGCC AAACGGATCC TCACCGACGT GGAGACCGCC
ACCCGGGAGG TGCAGGAACT GGTCGGCCTG CGGCGGGGCC GGGTACGCCT CGGCGCGACC
CCCAGCCTGG CCACCTCGCT GGCCCCGCCC GTGCTGCGCC GCTTCCGCGA CGCCCACCCG
ACAGTTGACC TGTGGGTCGA GGAGGGCGGC TCCCAGGACC TGGTGCGGCA CCTGCTCCGC
GGCGACCTGG ACCTGGCATT GATCATCGCG CCCGCCCAGG GCGCCGACCC GGGGCTGCGC
ACCGACGCGA TCCTCACCGA GAGCCTGGTG GTCGCCAGCG TCGGGCCCCT GCCGGAACAC
CCGCCGGCCG GCCCGATGCG CGTCGCCGAC CTGCGCGACC AGCCGCTGGT GATGTTCCGC
GAGGGGTACG ACCTGCGGGA CGCCACCCTG CAGGCGTGTC GGGAGGCCGG CTTCGAGCCC
GGGATCTCCG TGGATGGCGG GGAGCTGGAC TCGGTGCTCA GCTTCGTCGC GGCCGGGCTG
GGTGTCGCCC TGGTGCCCGG CAGCGTCGTC GCCAGCCGGC CCGGAATCCA CGTCACCCGG
CTCGCCCCAC CCGGCGTCCG CCGTACCATC GCCGTTGCCC GCCGCCGTGA TGTCGTCCCC
ACCCACGCCG GCCGGGAACT GCGTCGCATC CTCCTCGACT ACGTCGACGA CGCCATCGCC
ACTGACGCCC TGCCACCCGG CGTCGAACCC CGCTAG
|
|---|
| Protein sequence | MKMQLHQLRY FAAVAEVRHF TQAADVVGIT QPSLSKQIHA LETELGTPLF ERVRGKIALT
AAGEVLLPFA KRILTDVETA TREVQELVGL RRGRVRLGAT PSLATSLAPP VLRRFRDAHP
TVDLWVEEGG SQDLVRHLLR GDLDLALIIA PAQGADPGLR TDAILTESLV VASVGPLPEH
PPAGPMRVAD LRDQPLVMFR EGYDLRDATL QACREAGFEP GISVDGGELD SVLSFVAAGL
GVALVPGSVV ASRPGIHVTR LAPPGVRRTI AVARRRDVVP THAGRELRRI LLDYVDDAIA
TDALPPGVEP R
|
|---|
| |