| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sare_1706 |
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| Symbol | sdhA |
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| ID | 5704017 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Salinispora arenicola CNS-205 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009953 |
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| Strand | - |
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| Start bp | 1972708 |
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| End bp | 1974639 |
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| Gene Length | 1932 bp |
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| Protein Length | 643 aa |
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| Translation table | 11 |
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| GC content | 69% |
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| IMG OID | 641271209 |
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| Product | succinate dehydrogenase flavoprotein subunit |
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| Protein accession | YP_001536584 |
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| Protein GI | 159037331 |
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| COG category | [C] Energy production and conversion |
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| COG ID | [COG1053] Succinate dehydrogenase/fumarate reductase, flavoprotein subunit |
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| TIGRFAM ID | [TIGR01811] succinate dehydrogenase or fumarate reductase, flavoprotein subunit, Bacillus subtilis subgroup |
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Plasmid Coverage information |
| Num covering plasmid clones | 15 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 6 |
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| Fosmid unclonability p-value | 0.00254463 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGGATCTCT ACACCGAAGG TGACCCGGTC ACCGACACCC GGGCCCCCGA CGGGCCGATC
GAGGCCCGCT GGGACCGTCG CCGGTTCACG GCCAAGCTGG TCAACCCGGC CAACCGTCGC
AAGCTGACGG TGATCGTCGT CGGCACCGGC CTGGCCGGCG GTTCGGCCGC CGCGACCCTC
GCCGAGCAGG GCTACCAGGT CCGGTCCTAC TGCTACCAGG ACAGTCCTCG CCGGGCCCAC
TCGATCGCCG CACAGGGCGG CATCAACGCC GCGAAGAACT ACCGCAACGA CGGTGACTCC
GTGCACCGCC TCTTCTACGA CACCGTCAAG GGCGGCGACT TCCGCTCCCG CGAGTCGAAC
GTGCACCGAC TCGCCGAGGT GTCGGTCAAC ATCATCGACC AGTGCGTCGC CCAGGGTGTC
CCGTTCGCCC GCGAGTACGG CGGTCTGCTC GACACCCGCT CCTTCGGCGG CGCACAGGTG
CAGCGCACGT TCTACGCCCG GGGCCAGACG GGCCAGCAGC TGCTGCTCGG GGCGTACCAG
GCGCTGGAAC GTCAGATCGG CCTCGGCAAC GTGGAGATGA ACAGCCGGCA CGAGATGCTG
GAGCTGATCG TCGTCGCCGG TCGGGCCCGG GGCATCGTGG TGCGGGACCT GGTCACCGGC
GAGATCACCA CCGAGTTCGC CGATGCGGTC GTGCTCGCCT CCGGCGGCTA CGGCAACGTC
TTCTACCTCT CCACCAACGC CAAGGGCTGC AACGTCACCG CCACCTGGCG GGCGCATCGC
AAGGGGGCGT ACTTCGCGAA CCCCTGCTAC ACACAGATCC ACCCGACCTG CATCCCGGTC
TCCGGCGACC ACCAGTCAAA GCTGACGCTG ATGAGCGAGT CGCTGCGCAA CGACGGCCGG
GTGTGGGTAC CCCAGGTCGA GGGCGACGAC CGTGATCCGC GCGAGATCCC CGAGAACGAG
CGGGACTACT ACCTGGAACG CATCTACCCC TCGTTCGGCA ACCTGGTGCC CCGCGACATC
GCCTCCCGCG CGGCGAAGAA CGTCTGCGAC GAGGGCCGCG GCGTCGGCCC GACCGGACTC
GGCGTCTACC TGGACTTCGC CGACGCGATC CACCGGCTGG GCCGCAAGGC CATCGAGGCC
AAGTACGGCA ACCTGTTCGA GATGTACGAG CGAATCACCG GCGAGGACCC GTACGAGGTC
CCAATGCGGA TCTACCCCGC CGTGCACTAC ACGATGGGCG GACTCTGGGT CGACTACGAC
CTCCAGGCGA CCATCCCCGG CCTTTTCGTG ATCGGCGAGG CGAACTTCTC CGACCACGGC
GCGAACCGGC TGGGCGCGTC CGCGCTCATG CAGGGGCTCG CCGACGGCTA CTTCGTGCTG
CCGAACACCA TCGCCGACTA CCTCGCGGCC GGCCCCTTCG AGAAACTCGA GCCGAGCCAC
CCGGCGGCGG TCGAGGCCCG GCAGGCCGTC GCGGACCGGA TCCAGCGGCT CCTCGCCGTC
GACGGCGACC GGACCGTGGA TTCGTTCCAC CGGGAGCTGG GTCAGATCAT GTGGGAGCAC
TGCGGCATGG AGCGCTCCGC CGCCGGCCTG CGCAAGGCGG TCGACGAGAT CCGGGCGCTA
CGCGAGGAGT TCTGGCAACG GGTCCGGATC GTCGGCGACG CCGACGGACT CAACCAGTCG
CTGGAGAAGG CCGGCCGGGT GGCCGACTTC TTCGAGCTGG CCGAGCTGAT GTGCATCGAC
GCCCTGCACC GCGAGGAGTC CTGCGGCGGC CACTTCCGAG CCGAGCACCA GAGCCCCGAC
GGCGAGGCAC AGCGTGACGA CGAACGGTTC GCCTACGTGG CGGCCTGGGA GTACGGCACT
GAGCGGCCGG TGCTGCACAA GGAAGACCTG AAGTTCGAGT ACGTCCACCC CACGCAGCGG
AGTTACAAGT GA
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| Protein sequence | MDLYTEGDPV TDTRAPDGPI EARWDRRRFT AKLVNPANRR KLTVIVVGTG LAGGSAAATL
AEQGYQVRSY CYQDSPRRAH SIAAQGGINA AKNYRNDGDS VHRLFYDTVK GGDFRSRESN
VHRLAEVSVN IIDQCVAQGV PFAREYGGLL DTRSFGGAQV QRTFYARGQT GQQLLLGAYQ
ALERQIGLGN VEMNSRHEML ELIVVAGRAR GIVVRDLVTG EITTEFADAV VLASGGYGNV
FYLSTNAKGC NVTATWRAHR KGAYFANPCY TQIHPTCIPV SGDHQSKLTL MSESLRNDGR
VWVPQVEGDD RDPREIPENE RDYYLERIYP SFGNLVPRDI ASRAAKNVCD EGRGVGPTGL
GVYLDFADAI HRLGRKAIEA KYGNLFEMYE RITGEDPYEV PMRIYPAVHY TMGGLWVDYD
LQATIPGLFV IGEANFSDHG ANRLGASALM QGLADGYFVL PNTIADYLAA GPFEKLEPSH
PAAVEARQAV ADRIQRLLAV DGDRTVDSFH RELGQIMWEH CGMERSAAGL RKAVDEIRAL
REEFWQRVRI VGDADGLNQS LEKAGRVADF FELAELMCID ALHREESCGG HFRAEHQSPD
GEAQRDDERF AYVAAWEYGT ERPVLHKEDL KFEYVHPTQR SYK
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