| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sare_1529 |
|---|
| Symbol | |
|---|
| ID | 5708320 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Salinispora arenicola CNS-205 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009953 |
|---|
| Strand | - |
|---|
| Start bp | 1761391 |
|---|
| End bp | 1763112 |
|---|
| Gene Length | 1722 bp |
|---|
| Protein Length | 573 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 72% |
|---|
| IMG OID | 641271040 |
|---|
| Product | GAF sensor signal transduction histidine kinase |
|---|
| Protein accession | YP_001536416 |
|---|
| Protein GI | 159037163 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG4585] Signal transduction histidine kinase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 0.916601 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 4 |
|---|
| Fosmid unclonability p-value | 0.000293469 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | GTGACACCCA GTCCCCAACA CGAGTCGCAC GCCACCCCGT CGCTCGGGTT GACCCCGTTG
TCCCGGGTCC ACCTGGACGA TCTGCTGCAG GAGATGCTCG ACCGGGTCAG CCAGGTGGTC
ACCAGCCGGG AACGGCTGCG GGCGTTGCTC GACGCGGTGG TCGGCATCAG CACCGACCTC
GACCTGAGTA GCACGCTGCA GCGCATCGTC GAGGCGGCCT GCGGGCTGGC CGGCGCCCGC
TACGGCGCGC TCGGCGTCCT CGGCCGGGAC CGGACGCTGC ACGACTTCGT CCTCCACGGC
ATCGACCCCG AGCTGCACGC CAAGATCGGT GATCTACCGC ACGGTCGGGG TGTCCTCGGC
CTGTTGATCG AGGACCCGCG CCCGGTGCGG ATGCCCGACA TCACCAAGCA CCCCGAGTCC
TACGGTTTCC CGCCGCACCA CCCGCCGATG CACAGTTTCC TCGGGGTTCC GGTGCGGATT
CGGGATCAGG TCTTCGGCAA CCTCTACCTG GCCGAGAAGC AGGACGCGGC CGAGTTCACC
GAGGATGACG AGGAGATCGT GGTGGCGCTG GCCGCGGCGG CCGGGGTGGC GATCGAGAAC
GCCCGCCTCT ACGAGCTGGC GCACCGGCGG GAACGGTGGC TGGCCGCCGC CGCCGAGATC
ACCACGCTGC TGCTCGGCGA GGTCCACCGC ACCGACGCGC TGTCGCTGGT CGCGCGCCGC
GCCCGGGAGG TCGCCGAGGC GGAGCTGGCA CTGGTGCTGC TCTACGACCC CGGCGCGGAC
ACCTTCACCG TCGACGTGGT CGACGGCGCC GGTGAGCAGG CCGCCGCCCT GGTCGGCACC
GTCCTGCCCG CCGCCGACAC CAGTTTCGGC GCCGCCGTCA TCCACGGTCG GCACGACCGG
GTGGCTGATC TGGCCCACGC CGCGCCCTGG CCGGCGCTGC TGGACACCGG GCCGGCGGTG
CTCTCCCCAC TGGCGACCGC GGACACCCTG CACGGCGTCC TGGTGGTGGC GTACAGCGAC
GACCACGATG ACACCAGCGA GGACGATCTG GCGCTGCTCG GCAGCTTCGC CGCGCAGGCC
GCGCTGGCCA TGGAACGGGC CCGGGGCCAG GAGGAGCGGG AACTGCTGGT GGTCCTGGAG
GACCGCGAGC GGATCGCCCG GGACCTGCAC GACGTGGTGA TTCAGCGGCT GTTCGCCACC
GGCCTGCACC TGCAGAGCGC GGTGCCGATG AGCACGCGCC CCGAGCTGGC CAACCGGATC
AACGCGGCGG TGGACGACCT GGACGCCACG ATCAAGGACA TCCGTCGCAC CATCTTCGAG
CTGCGGACGC CGATGACCGC GGAGCTGCGC ATGGAGATCC GCGAGGCGGT CGAGGGCGCC
GCCGGGTCGT TGGGGTTCCG GCCGACGCTG GAGTTGGCCG GGCCGATCGA CAGCGCCGTC
TCGGACGAGC TGCGTCCCGA TCTCACGGCC GTGCTGCGGG AGGCCCTGTC CAACGCGGTA
CGCCACGCGC AGGCCCAGCA CGTCACGGTC ACCGTCCGGG TGGCGGCCGG CCAGGTGTCG
GTGACCGTCA TCGACGACGG GGTCGGCTGT GATCCGGCTG CCGCCCGGGG CGGGCTGGTC
AACCTCCGCG AACGTGCCGA GCGCCACGGT GGGGTCTTCG AGGTGCGGCC CGAGTCCCCG
CACGGCACCC GGCTGTACTG GTCCGTGCCG CTGGACGGCT GA
|
|---|
| Protein sequence | MTPSPQHESH ATPSLGLTPL SRVHLDDLLQ EMLDRVSQVV TSRERLRALL DAVVGISTDL
DLSSTLQRIV EAACGLAGAR YGALGVLGRD RTLHDFVLHG IDPELHAKIG DLPHGRGVLG
LLIEDPRPVR MPDITKHPES YGFPPHHPPM HSFLGVPVRI RDQVFGNLYL AEKQDAAEFT
EDDEEIVVAL AAAAGVAIEN ARLYELAHRR ERWLAAAAEI TTLLLGEVHR TDALSLVARR
AREVAEAELA LVLLYDPGAD TFTVDVVDGA GEQAAALVGT VLPAADTSFG AAVIHGRHDR
VADLAHAAPW PALLDTGPAV LSPLATADTL HGVLVVAYSD DHDDTSEDDL ALLGSFAAQA
ALAMERARGQ EERELLVVLE DRERIARDLH DVVIQRLFAT GLHLQSAVPM STRPELANRI
NAAVDDLDAT IKDIRRTIFE LRTPMTAELR MEIREAVEGA AGSLGFRPTL ELAGPIDSAV
SDELRPDLTA VLREALSNAV RHAQAQHVTV TVRVAAGQVS VTVIDDGVGC DPAAARGGLV
NLRERAERHG GVFEVRPESP HGTRLYWSVP LDG
|
|---|
| |