Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sare_1346 |
Symbol | thyX |
ID | 5704273 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Salinispora arenicola CNS-205 |
Kingdom | Bacteria |
Replicon accession | NC_009953 |
Strand | + |
Start bp | 1553378 |
End bp | 1554121 |
Gene Length | 744 bp |
Protein Length | 247 aa |
Translation table | 11 |
GC content | 69% |
IMG OID | 641270857 |
Product | FAD-dependent thymidylate synthase |
Protein accession | YP_001536238 |
Protein GI | 159036985 |
COG category | [F] Nucleotide transport and metabolism |
COG ID | [COG1351] Predicted alternative thymidylate synthase |
TIGRFAM ID | [TIGR02170] thymidylate synthase, flavin-dependent |
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Plasmid Coverage information |
Num covering plasmid clones | 16 |
Plasmid unclonability p-value | 0.2401 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 3 |
Fosmid unclonability p-value | 0.0000413782 |
Fosmid Hitchhiker | No |
Fosmid clonability | decreased coverage |
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Sequence |
Gene sequence | ATGGTGCAGC CCCAGGTCAA GCTCATCGCG TGGACCCACT TCGCGCCCCC GGACGACGTG GGATGGTCGA CCGACGCCGA CGGGGGGCAG GCGCTCGCGG AGTTCGCCGG CCGGGCCTGC TACCAGAGTT GGAAGAAGCC CAACCCGGCG ACGGCGACCA ACGCCGGCTA CCTCGCCCAC ATTCTCGAGG TGGGCCACCT GAGCGTGCTG GAGCACGGCT CGGTGAGTTT CTACTTCACC GGGGTGTCCC GCTCGTTCAC CCACGAGCTG ATCCGGCACC GGCACTTCTC GTACTCACAG CTGTCCCAGC GCTACGTGCC GGAGCGGGAC GCCGCGATGG TCGAGCCGGC GGTGATTGCC GAGGACCCGG AGCTGCACAA GCGGTTCGTC GAAGCGGCCG AGGCGAGCGT ACGGGCGTAC AACGAGTTGC TGGAAGGGCT GGAGCAGCGG TTCACCGACG AGCCCAATGC CACCCTGCGG CGCAAGCGCG CCCGGCAGGC GGCCCGGGCG GTGCTGCCGA ACGCCACCGA GACCCGCATC GTGGTCACCG GTAACTACCG GGCGTGGCGG CACTTCGTCG CCATGCGCGC GACCGAGCAC GCCGACGTGG AGATCCGCGA GCTGGCGGTG GAGTGCCTGC GTCAGCTTCA GGGTGTGGCG CCGAGCGTGT TCAACGACTT CGTGATCTCG TCCCTGCCCG ATGGCACCGA GGTGGCGGTC AGTCCGCACG CGGAGGTGTC CTGA
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Protein sequence | MVQPQVKLIA WTHFAPPDDV GWSTDADGGQ ALAEFAGRAC YQSWKKPNPA TATNAGYLAH ILEVGHLSVL EHGSVSFYFT GVSRSFTHEL IRHRHFSYSQ LSQRYVPERD AAMVEPAVIA EDPELHKRFV EAAEASVRAY NELLEGLEQR FTDEPNATLR RKRARQAARA VLPNATETRI VVTGNYRAWR HFVAMRATEH ADVEIRELAV ECLRQLQGVA PSVFNDFVIS SLPDGTEVAV SPHAEVS
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