| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sare_1254 |
|---|
| Symbol | |
|---|
| ID | 5703482 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Salinispora arenicola CNS-205 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009953 |
|---|
| Strand | + |
|---|
| Start bp | 1450544 |
|---|
| End bp | 1451884 |
|---|
| Gene Length | 1341 bp |
|---|
| Protein Length | 446 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 70% |
|---|
| IMG OID | 641270769 |
|---|
| Product | 3-deoxy-7-phosphoheptulonate synthase |
|---|
| Protein accession | YP_001536150 |
|---|
| Protein GI | 159036897 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG3200] 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) synthase |
|---|
| TIGRFAM ID | [TIGR01358] 3-deoxy-7-phosphoheptulonate synthase, class II |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 19 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 4 |
|---|
| Fosmid unclonability p-value | 0.000167974 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGACACCGT TTCCGGGCCG GTCGGCCGCG TCAGTGGGCC CGGCCCACAC CCACTCGGTG
GACCGGCTGC TGACCCGCCG GCTGGACGAG GCACTGGCTC GCCCGGCCGC CCAACAGCCG
TGCTGGCCGG ACCCCGAGCG GGCCAGCGCC GTCATCGAGC GGCTGCGACA CGCCGAGCCG
ATCGTGGCCC CGGACGAGAC GGCGCGGTTG TCCGAGCAGC TCGCGTCGGT CGCGCGCGGT
GAGGCGTTCC TGCTGCAGGG CGGCGACTGC GCCGAGACCT TCGTCGACAA CACCGAGACA
CACCTGCGAG CCAACCTACG GATCCTGTCG CAGATGGCAA CCGTGCTGAC CTCCGCCACC
GGCGTGCCGG TGGTCGAGAT CGCGCGGATG GCCGGACAGT ACGCCAAGCC CCGCTCCGCT
GTGGTGGACG CGTCGGGTCT TCCGGTCTAC CGCGGCGACA TCATCAATTC GACGGAGCCG
ACACCGACCG CCAGAACCCC CGACCCGCAA CGGATGCTGC GTGCCCGCGC GCATGCGGCC
GACGCGATGG ACATGGTCCG CAGAATCCGC GCGGGTGCGG CCCACATCAG CCACGAGATG
CTTCTGCTCG ACTACGAACG GGCCGGGCTC TGGGCCGATG CCTGCGGCCC CGGCACGCGG
CTGACCAGCG GGCTCGCCCA CTTCCTGTGG ATCGGCGAGC GTACCCGTCA GCTCGACGGC
GCCCATGTCG CGGTCGCCGA GCTGATCGCC AACCCGATCG GTCTCAAGTT GGGGCCGAGC
GTGACACCGG AACTGGCCGT CGAGTATGTG GAGCGCCTCG ACCCGCACTG CACACCGGGA
CGGCTGACAT TGGTGAGCCG GATGGGACAT CACCTGGTCC GCGATGTCCT GCCACCGATC
GTGGAGAAGG TCACCGCTTC CGGACATCAG GTGGTCTGGC AGTGCGACCC GATGCACGGT
AATACCCGGC AGTCGGCAAA CGGCTTCAAG ACTCGGCACG TCGACCATGT GGTCGACGAG
CTCGCCGGAT TCTTCGAGGT ACACCGTGGC CTCGGCACCC ACCCTGGTGG TATTCACGTC
GAGGTGACCG GAGAGGACGT GACGGAATGC CTCGGTGGTG CCTCGGGGAC CGCGGAGCGC
GACCTGCCCG CCCGCTACCG GACCGCGTGC GACCCACGGC TCAACGCTGA TCAGTCGCTC
GAGTTGGCCC GCTTCGTCGC GGAGCTGCTG ACGACCGTCG TCCGGGCGCC CACGCGAGGG
CGTGCTGGCC GAAACCTCGA CCTTGAGCGC ACCACACCAC CCGCCGGTAG GCCGTCCCAG
GTGCCCGTCG CCAGACGGTG A
|
|---|
| Protein sequence | MTPFPGRSAA SVGPAHTHSV DRLLTRRLDE ALARPAAQQP CWPDPERASA VIERLRHAEP
IVAPDETARL SEQLASVARG EAFLLQGGDC AETFVDNTET HLRANLRILS QMATVLTSAT
GVPVVEIARM AGQYAKPRSA VVDASGLPVY RGDIINSTEP TPTARTPDPQ RMLRARAHAA
DAMDMVRRIR AGAAHISHEM LLLDYERAGL WADACGPGTR LTSGLAHFLW IGERTRQLDG
AHVAVAELIA NPIGLKLGPS VTPELAVEYV ERLDPHCTPG RLTLVSRMGH HLVRDVLPPI
VEKVTASGHQ VVWQCDPMHG NTRQSANGFK TRHVDHVVDE LAGFFEVHRG LGTHPGGIHV
EVTGEDVTEC LGGASGTAER DLPARYRTAC DPRLNADQSL ELARFVAELL TTVVRAPTRG
RAGRNLDLER TTPPAGRPSQ VPVARR
|
|---|
| |