| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sare_1109 |
|---|
| Symbol | |
|---|
| ID | 5706674 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Salinispora arenicola CNS-205 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009953 |
|---|
| Strand | + |
|---|
| Start bp | 1247895 |
|---|
| End bp | 1250027 |
|---|
| Gene Length | 2133 bp |
|---|
| Protein Length | 710 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 71% |
|---|
| IMG OID | 641270624 |
|---|
| Product | DNA ligase, NAD-dependent |
|---|
| Protein accession | YP_001536008 |
|---|
| Protein GI | 159036755 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG0272] NAD-dependent DNA ligase (contains BRCT domain type II) |
|---|
| TIGRFAM ID | [TIGR00575] DNA ligase, NAD-dependent |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 0.822067 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 7 |
|---|
| Fosmid unclonability p-value | 0.0130408 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCCTGAGG ATGCCATCGG CCAGCAGGTC CCGCCGGAGC AGGAGGCGGC CGGCGCGGAG
CCGACCTCCG CGGCGCGCGA GCGGCACGCC ACGCTCAGCC TGGAGCTGAC CGAGCACCAG
TATCGCTACT ACGTTCTCGA CGCACCGACC ATCTCCGACG CGGAGTTCGA CGAGCGGCTG
CGGGAACTGG CGGCACTGGA GGCGGAGTTT CCCGCTCTAC GCACCCCCGA CTCACCGACG
CAGCGGGTGG GCGGCGCCTT CTCCACCGAT TTCACTCCGG TGGCGCACGC CGAGCGGATG
ATGTCGCTCG ACAACGCCTT CACCGATGAG GAACTGGACG CCTGGGCCGA GCGGGTCGAG
CGGGACGCTG GTGGCCCGGT TCCCTACCTG TGTGAACTGA AGGTGGATGG CCTCGCGATC
AACCTGACTT ACGAGCGGGG GCGCCTGGTG CGGGCCGCCA CCCGGGGTGA TGGCCGCACC
GGCGAGGACG TGACGGCGAA CGTGCGCAGC ATCCGGGACG TGCCGGCGGA GCTGGCACCG
TCGGCCGAGT TCCCGGAGAT CCCAGGGCTT CTGGAGGTCC GTGGCGAGAT CTACTTCCCG
ATCGCCGGAT TCGCGGACCT GAATGCGGGG CTGGTCGAGC AGGGCAAGGC CCCCTTCGCC
AACCCGCGTA ACGCGGCTGC CGGCAGTCTC CGGCAGAAGG ATCCGCGGAT CACCGCGTCC
CGCCCGCTGC GATTGGTCGT GCACGGCATC GGGGCCCGGC AGGGGTGGCA GCCGAGCACC
CAGTCCGAGT CGTACGCGGC GCTGCGGGCC TGGGGCCTGC CGACCAGCGA CCGATGGCGG
GTCGTGCCGG ACCTGGCCGG CGTGGCGGAG TACATCGCGC ACTACGCCAC CCACCGGCAC
GACGTCGAGC ACGAGATCGA TGGTGTGGTG GTGAAGGTCG ACCCGGTCTC GATCCAGGGC
CGACTGGGGT CGACGAGCCG GGCGCCGCGC TGGGCGATCG CCTTCAAGTA CCCGCCCGAG
GAGGTCAACA CCCGGCTGCT CGACATCGAC GTGAATGTCG GCCGTACCGG CCGGGTCACT
CCGTTCGCTG TCCTGGAGCC GGTGCGGGTG GCCGGATCGA CGGTGGCGCT GGCCACCCTG
CACAACGCCC GCGAGGTAAG GCGCAAGGGT GTGCTGATCG GCGACACGGT GGTGATCCGT
AAGGCCGGTG ATGTGATCCC CGAGGTGCTC GGTCCGGTGG TGGAGCTGCG CCCGCCGGAC
GCCCGGTCGT TCGTGATGCC CAGCACGTGC CCGTGCTGCG GCACCCCGCT GGCCCCGGCG
AAGGAGGGCG ACGTCGACAT CCGCTGCCCC AACACCCGCA GCTGTCCGGC CCAGCTCCGG
GAGCGGGTCT TCCACCTCGC CGGACGGGGA GCCTTCGACA TCGAGGTTCT CGGTTACAAG
GGAGCTGCGG CACTCCTCGA CGCCCAGATC ATCACGGATG AGGGAGATCT GTTCGCCCTC
GACGCGGCGC AGCTGACGCG CTCTCCGTTC TTCGTCAACA AGGACGGCAG CCTCGGCAGC
AACGCGGTCA AGCTGTTGGA CAACCTGACC GTGGCCAAGG AGCGCGAGCT GTGGCGGGTG
CTGGTGGCGC TCTCCATCCG GCACGTGGGC CCGACCGCGG CGCAGGCCCT TGCCCGGCAC
TTCCGGTCGA TCGAGGCGAT CGACCAGGCC GGGGAGGAGG AACTGTCGGC TGTCGACGGG
GTCGGGCCGA CCATCGCCGC GAGTGTCCGG GAGTGGTTCG CTGTCGCCTG GCACCGGGAG
GTGGTGCGCA AGTGGGCCGA GGCGGGGGTG CGGATGACGG AGGAGGCGGT GGACGAGGGG
CCGCGCCCGC TGGAGGGGAT GACCGTGGTG GTGACCGGAA CGCTCGCCGG CTTCTCGCGG
GACCAGGCGG CCGAGGCGAT CCAGTCGCGG GGAGGCAAGG TCACCGGCTC GGTCTCGAAG
AAGACCGCGT TCGTCGTGGT CGGTGAGAAC CCTGGGACGA AGGCGGACAA GGCGGCGAGC
CTGAAGGTGC CGGTGCTGGA CGAGGAGGGC TTCCGGGTGC TGCTCGACGC GGGTCCGGAC
GCGGCCCGCG AGGTGGCCCG GGTCGAGGAC TGA
|
|---|
| Protein sequence | MPEDAIGQQV PPEQEAAGAE PTSAARERHA TLSLELTEHQ YRYYVLDAPT ISDAEFDERL
RELAALEAEF PALRTPDSPT QRVGGAFSTD FTPVAHAERM MSLDNAFTDE ELDAWAERVE
RDAGGPVPYL CELKVDGLAI NLTYERGRLV RAATRGDGRT GEDVTANVRS IRDVPAELAP
SAEFPEIPGL LEVRGEIYFP IAGFADLNAG LVEQGKAPFA NPRNAAAGSL RQKDPRITAS
RPLRLVVHGI GARQGWQPST QSESYAALRA WGLPTSDRWR VVPDLAGVAE YIAHYATHRH
DVEHEIDGVV VKVDPVSIQG RLGSTSRAPR WAIAFKYPPE EVNTRLLDID VNVGRTGRVT
PFAVLEPVRV AGSTVALATL HNAREVRRKG VLIGDTVVIR KAGDVIPEVL GPVVELRPPD
ARSFVMPSTC PCCGTPLAPA KEGDVDIRCP NTRSCPAQLR ERVFHLAGRG AFDIEVLGYK
GAAALLDAQI ITDEGDLFAL DAAQLTRSPF FVNKDGSLGS NAVKLLDNLT VAKERELWRV
LVALSIRHVG PTAAQALARH FRSIEAIDQA GEEELSAVDG VGPTIAASVR EWFAVAWHRE
VVRKWAEAGV RMTEEAVDEG PRPLEGMTVV VTGTLAGFSR DQAAEAIQSR GGKVTGSVSK
KTAFVVVGEN PGTKADKAAS LKVPVLDEEG FRVLLDAGPD AAREVARVED
|
|---|
| |