Gene Sare_0952 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSare_0952 
Symbol 
ID5704488 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSalinispora arenicola CNS-205 
KingdomBacteria 
Replicon accessionNC_009953 
Strand
Start bp1075870 
End bp1076865 
Gene Length996 bp 
Protein Length331 aa 
Translation table11 
GC content67% 
IMG OID641270469 
ProductRNA polymerase factor sigma-70 
Protein accessionYP_001535857 
Protein GI159036604 
COG category[K] Transcription 
COG ID[COG1595] DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog 
TIGRFAM ID[TIGR02937] RNA polymerase sigma factor, sigma-70 family
[TIGR02960] RNA polymerase sigma-70 factor, TIGR02960 family 


Plasmid Coverage information

Num covering plasmid clones23 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.0742081 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGTGCGACG ATCGGTCCGT GGTTGCCAGT ATCGACTCTG CCTTGCTGTC GGCGGCGCAA 
GCCGGGGATT CGGACGCGTT CGCCGCTGTG GTCGACCCGT TCCAAGGGGA GTTGCACGCA
TACTGCTATC GGATGCTGGG TTCCGTCCAT GACGCCGATG ACGCCGTTCA GGAGACGCTG
GTCCGGGCCT GGCGGGCGTT TGACCGATTT GAGCCTCGTG GATCAATGCG GGCTTGGCTG
TACCGGATCG CCACCAACCG GTGCCTGTCG ATTCTCAACG GGCGAGGCCG CCGGGAACTG
CCGGCCGATC TCGAGCGCAT CGCGGGAGGC GACACCGAGA TCTCCTGGCT GGAGCCTTAC
ACGGACGAGC GGCTGGGCCC GGAGCAACGC ACTGTCGCGA GGGAGAGCAT CGAGCTGTCG
TTCGTTGCCG CGGTGCAGCG ATTGACCGGT AGGCAGCGTG CGGTGCTCCT GTTGCGGGAG
GTGCTGGGCT TCACCGCCCG CGAGGTGGCT GACCAGCTCG ATACCACCGT GGCCGCCGTC
AACAGCGCGC TGCAGCGCGC CCGCGCAGTT CTCGATCCGG GACTGCCCAC CGCGACCCAG
CAGGCGACGA TGCGCCAGAT GGGTGACACC GCGGTTCGGG ACCTGGCCCG ACGGTACGCA
CAGGCGTGGG AGGCGGCCGA TGTCGACACC ATCGTTTCGA TGCTGGTCGA GGACGCCCGC
TACTCTATGC CGCCGGTGCC GACCTGGTTC ACCGGCCGGA AGGCCATCTG CGACTTTCTG
CTCAGCGGCC CGCTGACGTG TGGCTGGCGG TTCGTGGCGA CCGAGGCGAA CAGTCAGCTT
GCGTTCGGCA CGTATCGCTG GGACAGCGAC CACGCCGCTT ACCGTCCCTG CGGGCTGGAC
GTCCTGACAC TGCGTCGAGA CGGCATCGCG GAGGTCGTGT CCTTCCTCGA AGCCGACTTC
GCCGCGCACG GCCTGCCACC CAGCCTGCCG AACTGA
 
Protein sequence
MCDDRSVVAS IDSALLSAAQ AGDSDAFAAV VDPFQGELHA YCYRMLGSVH DADDAVQETL 
VRAWRAFDRF EPRGSMRAWL YRIATNRCLS ILNGRGRREL PADLERIAGG DTEISWLEPY
TDERLGPEQR TVARESIELS FVAAVQRLTG RQRAVLLLRE VLGFTAREVA DQLDTTVAAV
NSALQRARAV LDPGLPTATQ QATMRQMGDT AVRDLARRYA QAWEAADVDT IVSMLVEDAR
YSMPPVPTWF TGRKAICDFL LSGPLTCGWR FVATEANSQL AFGTYRWDSD HAAYRPCGLD
VLTLRRDGIA EVVSFLEADF AAHGLPPSLP N