| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sare_0838 |
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| Symbol | |
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| ID | 5707274 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Salinispora arenicola CNS-205 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009953 |
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| Strand | + |
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| Start bp | 939399 |
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| End bp | 941129 |
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| Gene Length | 1731 bp |
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| Protein Length | 576 aa |
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| Translation table | 11 |
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| GC content | 63% |
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| IMG OID | 641270356 |
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| Product | thiamine pyrophosphate binding domain-containing protein |
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| Protein accession | YP_001535747 |
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| Protein GI | 159036494 |
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| COG category | [G] Carbohydrate transport and metabolism
[H] Coenzyme transport and metabolism
[R] General function prediction only |
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| COG ID | [COG3961] Pyruvate decarboxylase and related thiamine pyrophosphate-requiring enzymes |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 5 |
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| Plasmid unclonability p-value | 0.00172744 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | 10 |
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| Fosmid unclonability p-value | 0.208315 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | GTGGGCGGCA GCGGGGGGTC GGTCACAGTC GGCGAACTGT TGCTTGGTCG CCTCCACGAC
CTCGGCGTGC GTCATGTTTT TGGAGTGCCC GGCGACTATG CAATGGACTT CATAGATCAG
ATCATGACGT TCGATGGCAT CGACTGGATC GGTAGCTCCA GCGAGTTCAA CGCCGGCTGC
AGTGCGGACG GCTACGCCCG AGTTGCTGGC ATAGGTGCCA TTGTTACCCA ATTTGGTGTG
GGCGAACTGT CGACCATGAA TGCATTGGCT GGCGCAATGG CTGAGTCGGT GCCTATCGTC
TCGGTCGTGG GTGGCCCGAT GCTGGAAGTC ATGCGGCAGC GCACGTCGAT TCACCACTCA
CTCGCGGATG GCGATTCCGA GCGTTGGATT CGGATGGCCC GCGAGGTGAC GGTTGCCCAA
GCCTCGTTGA CGCCCGAATG TGCACTGCAG GAGATCGACC GGGTGTTGGC CGAGTGCTGG
TCCCAGCAGC GTCCCGTATA CATTCGAATT CCCGGTGATG TGGCCATAGC TCCCGTCTCC
CGACCGTCGC GACGCTTCAC CCGCCCAAAT CCGGTCGTGT TGCCCGCACA ACTGGACGCG
TTCGCCGCCG CTGCTCAGCG CCTGCTCGCT GGTGCCGAAC GGCCAGCCTT GCTGGTGGGG
AATCTACCGA TACGCCTCGG TCTTGGTGCG GCTGTCGCCG CGCTCGCCAA CGAGCGAAAC
TGGCCGATCG CCACTCAGAT GCTCGGCCGA GGGCTGGTTG ACGAGACAGA TCCCCACTAC
ATCGGCATCT ACAACGGGGC CGAAAGTTCG GCTCCGGTCC GCGAGGTGGT CGAAGGCGCC
GACGTCCTGG TCTGTCTGGG AACCACCTTT TTCGACTGGA ATGGTCTGTT CACCGCTGAA
CTGGATCCTG CCCGGATCAT AAACCTGAGG CGGGACGGCG CTGTGGTCGG CGGAACCTGT
TTCGCCCCGG TATCCATGGC CGCGGCGCTG GATCGGTTGC ACGAGATGGC TGCCAGTCGT
TCGGTTGGCT GGCCGAGCGC TGCCCTGTTG CACGACCCGC CCGAAATCGA CAGGGCAAGC
ACCGACCCAA TCCGTCAGGA ACGACTCTGG TCGGCGGTTC AGGACGTACT GCGTCCGGGG
GATATTTTGG TCTCGGAGGT CGGCACCGCG TTCTTCGGTG CGGCAACAAT GCGCCTACCG
GCTGGGACGA CTGTATTGGC GGCGCCAATC TGGAGCTTGG CCGGCTATAC CACGCCTGCT
GCTTTCGGCG CCGGGATCGC CGCGCCTGAC CGGCGGGTGG TGTCGATCAC CGGCGACGGG
GGAATACAAA TTTCCCCACA GGAGATAAGC CGAATGTTCG TCTTTGATCA ACATCCGATC
ATATTCGTGG TGAATAACGG TGGCTACAGT AGCGAGCGAG CGCTTGAAAA AGCGGTCGGG
GAAGAAACTC AGGCGTACAC CCAGATCCCT GACTGGCGAT ATAGTGAGAT ACCGGCGGTG
TTTGCGCCGG AGGGAACCTT CGTTGCGCAT GTCGCCCGCA CCGAGGCCGA GTTGGCTGGG
ATCTTGGCCG GTGTCGACGG GCGTACGGAC CGGCTGACTC TCATTGAGGT GATCGTCGAC
CCGACGGATC TGCCTCCAGG GTTGCCGCAG TGGAGCCAGG AGGCATCCGC CTTTATCTAC
CACGCGCAGT TCCCTGCCCC GGCCAGTCTC CCCTGGGGCG GGCTCGGCTA G
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| Protein sequence | MGGSGGSVTV GELLLGRLHD LGVRHVFGVP GDYAMDFIDQ IMTFDGIDWI GSSSEFNAGC
SADGYARVAG IGAIVTQFGV GELSTMNALA GAMAESVPIV SVVGGPMLEV MRQRTSIHHS
LADGDSERWI RMAREVTVAQ ASLTPECALQ EIDRVLAECW SQQRPVYIRI PGDVAIAPVS
RPSRRFTRPN PVVLPAQLDA FAAAAQRLLA GAERPALLVG NLPIRLGLGA AVAALANERN
WPIATQMLGR GLVDETDPHY IGIYNGAESS APVREVVEGA DVLVCLGTTF FDWNGLFTAE
LDPARIINLR RDGAVVGGTC FAPVSMAAAL DRLHEMAASR SVGWPSAALL HDPPEIDRAS
TDPIRQERLW SAVQDVLRPG DILVSEVGTA FFGAATMRLP AGTTVLAAPI WSLAGYTTPA
AFGAGIAAPD RRVVSITGDG GIQISPQEIS RMFVFDQHPI IFVVNNGGYS SERALEKAVG
EETQAYTQIP DWRYSEIPAV FAPEGTFVAH VARTEAELAG ILAGVDGRTD RLTLIEVIVD
PTDLPPGLPQ WSQEASAFIY HAQFPAPASL PWGGLG
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