| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sare_0829 |
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| Symbol | |
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| ID | 5704133 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Salinispora arenicola CNS-205 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009953 |
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| Strand | + |
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| Start bp | 928810 |
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| End bp | 932466 |
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| Gene Length | 3657 bp |
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| Protein Length | 1218 aa |
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| Translation table | 11 |
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| GC content | 72% |
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| IMG OID | 641270347 |
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| Product | transcription-repair coupling factor |
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| Protein accession | YP_001535738 |
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| Protein GI | 159036485 |
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| COG category | [K] Transcription
[L] Replication, recombination and repair |
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| COG ID | [COG1197] Transcription-repair coupling factor (superfamily II helicase) |
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| TIGRFAM ID | [TIGR00580] transcription-repair coupling factor (mfd) |
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Plasmid Coverage information |
| Num covering plasmid clones | 6 |
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| Plasmid unclonability p-value | 0.46683 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 10 |
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| Fosmid unclonability p-value | 0.375475 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCTCACCG GACTTTTCGT CGCCGCCCTC ACCGACCCGG CCCTGGCCAG GGCCAGGGAC
CTGGCGCGGT CCGGCGCGGC CCAGGTCGAC GGGCTCGACC TGACCGCACC GCCGGCGCTA
CGCCCCTTCG CGGTTGCCGC CATCGCGGCC GACGAGCCCG TGGGGGGCGC GGGACGCCCC
GTGCTGGCGG TCACCGCGAC CACCCGGGAG GCCGACGACC TGGCCGCCGC ACTGGGCTGC
CTGATCCCGG CCGACCAGGT GGCGGTCTTC CCATCCTGGG AGACGTTGCC GCACGAACGA
CTCTCGCCGC GTTCGGACAC GGTGGGTCGC CGGCTGGCTG TGCTCCGTCG CCTCGCCCAC
CCCGACGCGG CCGACTCGCA GGGGCGCCAC GGCCCGCTGC GGGTGATCGT CGCTCCGGTC
CGGTCCCTGC TGCAACCGCA GCTCAAGGGG CTGGGGGAGC TGGAGCCGGT GCGGCTGGCC
GCCGGCGACG AGGCTGACCT CGAAGACCTG GCACGCCGGC TCACCGACCT GGCGTACGCG
CGGGTGGACC TGGTCACCAA GCGCGGTGAG TTCGCGGTGC GCGGCGGTAT TCTGGACGTC
TTCCCGCCCA CCGACGAGCA TCCAGCCCGG GTCGAGTTCT GGGGCGACGA GGTGGAGGAG
ATCCGGACCT TCGCCGTGGC CGACCAACGC ACCATCGAGG GAGTCGGCCA ACTCTGGGCT
CCGCCCTGCC GGGAGCTGTT GCTCACCCCG GCCGTGCGGA AGCGGGCCGC TGCCCTGGCC
GTCGACCACC CGGAGTTGGC GGAGATCCTC GACAAGCTTG CCGAGGGGAT ACCGGTCGAG
GGGATGGAGT CGCTCGCTCC GGTGCTGATC GGCGCTGACT CGATGGAGCT GCTGCTGGAC
ACCATGCCCG CGGGTACCCA CGTGCTGCTC TGCGATCCGG AGCGGATCCG CACCCGGGCG
CACGACCTGG TGCGTACCTC GGCGGAGTTC CTCCAGGCCA GCTGGGCCGC GGCTGCGGTC
GGCGGCGCGG CCCCGATCGA CCTCGGTGCT GCCGCCTTCC GAACGCTCGC CGACGTCCGC
GTGCGGGCCC GCGCGCTGGG CCAGCCGTGG TGGACGGTGT CCCCGTTCGG GCTGGCCGAG
CCGGCCACGG CACCGGCGCG TCAGCCGTGG GAGGACGAGC CGGCCGAGAT CGATGTCACT
CCGGACGACG CGATCGCGGT GACCGTCGCG GCCCAGCCCG CGCCGCTGTA TCACGGCGAG
ACGGCACGGG TGGTCGACGA CCTGAAGCGT TGGGCCGGCG AGGGCTGGTC GGTGGCGCTG
GTGTTCGAGG GCCACGGCCC CGCCCAGCGC GCCGTCGAGG TGCTGCACGA CGCCGGCCTC
GGCGTCCGCC TGGTCGACGA GGTGCCGGCG GCACCGGCCA CCGGCGAGAT ACTGGTCAGC
CGCGGGTCGC TGACCGGTGG CTTCGTCGAC GCGGCGTCCC GTTTCGTGCT GCTCACCGGG
GATGACGTCA CCGGCGGCCG AGGCACCTCG ACGCGGGACA TGCGCAAGCT GCCGAGCCGG
CGGCGCAACA CCATCGATCC GCTGGAGCTG CGGGCCGGCG ATCACGTGGT GCACGAGCAG
CACGGCATCG GCCGGTACGT CGAACTGGTG CAGCGCACCG TCAACGGAGC CAGCCGGGAG
TACCTGGTCA TCGAGTACGC CCCGAGTAAG CGTGGCCAGC CCGGCGACCG GCTCTTCGTC
CCCACCGACC AGCTCGACCA GCTGTCCCGG TATGTCGGCG GCGAGCAGCC GACCCTGCAC
AAGATGGGTG GCTCGGACTG GCAGAAGTCG AAGGCCCGGG CCCGCAAAGC CGTCCGGGAG
ATCGCCGCGC AGCTCATCCA GCTCTACGCC GCCCGCAAGG CGTCCAAGGG GCACCCGTTC
GGCCCGGACA CCCCGTGGCA GCGGGAGCTG GAGGACGCCT TCCCCTGGCA GGAGACGCCG
GACCAGCTCG CGGCGATCGA GGAGGTCAAG CGGGACATGG AGCAGACGGT CCCGATGGAC
CGGCTGATCT GCGGCGACGT CGGTTACGGC AAGACCGAGA TCGCTGTCCG GGCGGCGTTC
AAGGCCATCC AGGACGGCCG GCAGGTGGCC GTGCTCGTGC CCACCACCCT GCTGGTGCAG
CAGCACTACA ACACCTTCGC CGAGCGGATG AGTCAGTTCC CGGCGACGAT TCGTCAGCTG
TCCCGGTTCC AGACGTCGAA GGAGGCCGAG CAGACTCTGA CGATGGCCGC CGACGGCACC
GCCGACATCG TTATCGGCAC CCACCGGCTG CTCCAGGCGT CCGCCCGGTT CAAGTCGCTC
GGGCTGGTCA TCGTGGACGA GGAGCAGCGT TTCGGCGTCG AGCACAAGGA GCACCTGAAG
TCGGTGCGGG CCTCCGTTGA CGTGTTGAGC ATGTCGGCCA CACCGATCCC CCGGACGCTG
GAGATGGCGA TCACCGGTAT CCGGGAGATG TCCACCATCG CCACCCCGCC GGAGGAGCGG
CACCCGGTGC TCACCGCGGT CGGGGCGTAC GACGAGCGGC AGGTGGCCGC CGCCATTCAC
CGCGAGTTGC TCCGCGACGG TCAGGTCTTC TACCTGCACA ACCGGGTGGA GTCGATCGAG
CGGGCGGCGC GCAGGCTGCG GGAGCTGGTG CCGGAGGCGC GGGTTGCGGT GGCGCATGGC
CAACTGGGCG AGGAGGCCCT GGAACGGGTC ATGGTCGGCT TCTGGGAAAA ACAGTTCGAC
GTCCTGGTCT GCACCACGAT CGTCGAGTCC GGCATCGACA TCCCGAACGC CAACACCCTG
ATCGTCGAGC GGGCCGATCT GCTCGGCCTG GCCCAGCTGC ACCAGATCCG GGGCCGGGTC
GGCCGTGGTC GGGAGCGGGC GTACGCGTAC TTCCTCTACC CGTCGGACAA GCCGCTCACC
GAGCACGCCC ACGAACGGTT GGCCACCATC GCCCAGCACA CCGAGTTGGG GGCCGGCATG
TACGTGGCGA TGAAGGACCT GGAGATCCGG GGCGCCGGCA ACCTGCTCGG TGGCGAGCAG
TCCGGCCACA TCGAGGGCGT CGGTTTCGAC CTGTACGTGC GGATGGTCGG CGAGGCGGTG
CAGGCGTTCA AGGGAGAGCG TCCGGAGGAG GAGACGGAGG TCAAGGTCGA TCTGCCGGTG
GACGCGCACC TGCCGCACGA CTACGTCGGG GTGGAACGGC TACGCCTGGA GATGTACCGC
AAGCTCGCTG AGGCCCGCGA CGAGGAGCGG CTGCGCGCGG TGGTCGCCGA GCTGACCGAC
CGCTACGGCG AGCCGCCGGC CCCGGTGCAG AACCTGGTGG CGGTGGCCCG GTTCCGGCTG
CTCGCCCGGC GGTACGGGCT CACCGACGTC AGCATGCAGG GCCGGCATCT GCGCTTCGGC
CCGTTGCCGC TGCCCGACTC GAAGCAACTG CGGCTCAAGC GGTACCACCC GGACGCGGTC
TACAAGCAGG CGCTGGAACA GGTCAGCGTG CCGCGGCCCA GTACTCGGCG GATCGGTGGC
GAGCTGCTGC GCGACCAGGC GCTGCTGGAA TGGTGCGGAC AGCTGCTCGC CGACGTACTC
GGCGAGCCTC GGGAACTGGC CGGTGCCGCT GGTTCGGCGG TGCGCGGCGG ACGGTGA
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| Protein sequence | MLTGLFVAAL TDPALARARD LARSGAAQVD GLDLTAPPAL RPFAVAAIAA DEPVGGAGRP
VLAVTATTRE ADDLAAALGC LIPADQVAVF PSWETLPHER LSPRSDTVGR RLAVLRRLAH
PDAADSQGRH GPLRVIVAPV RSLLQPQLKG LGELEPVRLA AGDEADLEDL ARRLTDLAYA
RVDLVTKRGE FAVRGGILDV FPPTDEHPAR VEFWGDEVEE IRTFAVADQR TIEGVGQLWA
PPCRELLLTP AVRKRAAALA VDHPELAEIL DKLAEGIPVE GMESLAPVLI GADSMELLLD
TMPAGTHVLL CDPERIRTRA HDLVRTSAEF LQASWAAAAV GGAAPIDLGA AAFRTLADVR
VRARALGQPW WTVSPFGLAE PATAPARQPW EDEPAEIDVT PDDAIAVTVA AQPAPLYHGE
TARVVDDLKR WAGEGWSVAL VFEGHGPAQR AVEVLHDAGL GVRLVDEVPA APATGEILVS
RGSLTGGFVD AASRFVLLTG DDVTGGRGTS TRDMRKLPSR RRNTIDPLEL RAGDHVVHEQ
HGIGRYVELV QRTVNGASRE YLVIEYAPSK RGQPGDRLFV PTDQLDQLSR YVGGEQPTLH
KMGGSDWQKS KARARKAVRE IAAQLIQLYA ARKASKGHPF GPDTPWQREL EDAFPWQETP
DQLAAIEEVK RDMEQTVPMD RLICGDVGYG KTEIAVRAAF KAIQDGRQVA VLVPTTLLVQ
QHYNTFAERM SQFPATIRQL SRFQTSKEAE QTLTMAADGT ADIVIGTHRL LQASARFKSL
GLVIVDEEQR FGVEHKEHLK SVRASVDVLS MSATPIPRTL EMAITGIREM STIATPPEER
HPVLTAVGAY DERQVAAAIH RELLRDGQVF YLHNRVESIE RAARRLRELV PEARVAVAHG
QLGEEALERV MVGFWEKQFD VLVCTTIVES GIDIPNANTL IVERADLLGL AQLHQIRGRV
GRGRERAYAY FLYPSDKPLT EHAHERLATI AQHTELGAGM YVAMKDLEIR GAGNLLGGEQ
SGHIEGVGFD LYVRMVGEAV QAFKGERPEE ETEVKVDLPV DAHLPHDYVG VERLRLEMYR
KLAEARDEER LRAVVAELTD RYGEPPAPVQ NLVAVARFRL LARRYGLTDV SMQGRHLRFG
PLPLPDSKQL RLKRYHPDAV YKQALEQVSV PRPSTRRIGG ELLRDQALLE WCGQLLADVL
GEPRELAGAA GSAVRGGR
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