| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sare_0705 |
|---|
| Symbol | |
|---|
| ID | 5706305 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Salinispora arenicola CNS-205 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009953 |
|---|
| Strand | + |
|---|
| Start bp | 783198 |
|---|
| End bp | 784715 |
|---|
| Gene Length | 1518 bp |
|---|
| Protein Length | 505 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 72% |
|---|
| IMG OID | 641270223 |
|---|
| Product | ABC transporter related |
|---|
| Protein accession | YP_001535615 |
|---|
| Protein GI | 159036362 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG1129] ABC-type sugar transport system, ATPase component |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 14 |
|---|
| Plasmid unclonability p-value | 0.355127 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 6 |
|---|
| Fosmid unclonability p-value | 0.00291671 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | GTGACCACCG CGCTACTACG CCTCACGGCC GTCAGCCACT CCTACGGCGC CCGTCGAGCG
GTCGACGAGG TCAGCGTTGA GCTCCGCCCG GGGGCCCGGC ACGCGATCAT CGGCCCGAAC
GGTGCCGGCA AGTCCACCCT GCTGCACCTC GTTGCTGGCA CCCTGCGCCC CACCTCGGGC
CGGATCCACT TCGCCGGCGA GGACGTTCAT CGTTGGCCCG CCCACCGCCG TGCCCGCGCT
GGTATTGCCC GCACCTGGCA GCATCCCGCA CTCGCCGGTC CACTCACCGC CATGCAGAAT
GTACTGTTCG CCGTCCCCGG GCAGCGCCTT TCGGCGTTAC GGACGCGGCC GTCCGCGGTG
ACGGCCGCCC ACACCGCGCT GGACCAGGTC GGCCTCACCG CGCACGCCGA CCAGCCTGCC
GCACGGCTCG CCTACGGCGA CCAGCGCCGC CTCGAGATCG CTGTCGCCCT CGCCGCTCAG
CCTCGGCTGC TGCTGCTCGA CGAGCCCACC GCCGGCCTCG CCACCGATGA GGTCAGCGGG
CTGGCCCAGC TGATCCGTGC CCTGACTGGC GAGATCACCG TGCTGCTGGT CGATCACAAC
CTCGACTTCG TCGCCGCCGT GGCCGACACC GTGACGGTCC TGCACCATGG TCAGCACGTC
GCCACCGGGG CTCCCGCCGC GATTCGTGAG CACCCCGACG TGCGACGTGT GTACCTCGGC
GTGGACACCT CCACCGGCCC TGCGTCGGGC GGCGTCCCGG ACAGCTCGAC CACCACCACC
GTGGTGGGCA CACCCGTCCT CCGTGTGCGC AACCTGCGTG CGGGCTACAC CGGTGCGCCC
ATGCTCACCG ATATCACCCT CGACGTGCGA GCCGGGCGAG TGACCGCAGT CGTCGGTCGC
AACGGTGCGG GCAAATCCAC CCTGCTCAAC GCCATCGCCG GTCTGCACCC CACCGAACCT
GGCACCGATG TCCTCCTGCA TGGGCAGTCC TTGACCGGGT GTGACGCCCG CCGCCGCGCC
CACGCCGGCC TCGGCATCGT CCCGCAGGGG CGCCGCCTGT TCGCCGGACT CACCGTCGAC
GAACACCTCA CCCTGCCTCG ACCGCGCTCG ACCCGGTCCG GGGCGGTTGA TGCCCGTCAC
GTCCTCGACC TGTTCCCCGC GCTGGCGCAG CGGCGCCGTC ATCGCCCGCA CCAGCTCTCC
GGGGGCGAGC AGCAGATGCT CGCCCTGGCC CGTGCGTTGC TTACCAGCCC CGATGTGCTG
CTGCTCGACG AGCCCTCCGA AGGGCTCGCC CCCGCCGTCG TCGGCCAGCT CGCAACGATG
GTCACCGGCC TCGCCGCCGC CGGTACCGCT GTTTTGCTCG CGGAGCAGAA CCTTGCCCTG
GCCTGCCAGG TCGCGCACGA CATCGCGGTC CTGGACCGCG CCCGAATCGT CCGCCACGTC
GCAACGGCCG ACATCCGTGA GTACCCCACC GAGCTGCATG ACCTGCTCAC CGTTCCGACC
GCCGCCCCGA CCCGATGA
|
|---|
| Protein sequence | MTTALLRLTA VSHSYGARRA VDEVSVELRP GARHAIIGPN GAGKSTLLHL VAGTLRPTSG
RIHFAGEDVH RWPAHRRARA GIARTWQHPA LAGPLTAMQN VLFAVPGQRL SALRTRPSAV
TAAHTALDQV GLTAHADQPA ARLAYGDQRR LEIAVALAAQ PRLLLLDEPT AGLATDEVSG
LAQLIRALTG EITVLLVDHN LDFVAAVADT VTVLHHGQHV ATGAPAAIRE HPDVRRVYLG
VDTSTGPASG GVPDSSTTTT VVGTPVLRVR NLRAGYTGAP MLTDITLDVR AGRVTAVVGR
NGAGKSTLLN AIAGLHPTEP GTDVLLHGQS LTGCDARRRA HAGLGIVPQG RRLFAGLTVD
EHLTLPRPRS TRSGAVDARH VLDLFPALAQ RRRHRPHQLS GGEQQMLALA RALLTSPDVL
LLDEPSEGLA PAVVGQLATM VTGLAAAGTA VLLAEQNLAL ACQVAHDIAV LDRARIVRHV
ATADIREYPT ELHDLLTVPT AAPTR
|
|---|
| |