| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sare_0570 |
|---|
| Symbol | |
|---|
| ID | 5705556 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Salinispora arenicola CNS-205 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009953 |
|---|
| Strand | - |
|---|
| Start bp | 647341 |
|---|
| End bp | 649320 |
|---|
| Gene Length | 1980 bp |
|---|
| Protein Length | 659 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 71% |
|---|
| IMG OID | 641270095 |
|---|
| Product | methionine--tRNA ligase |
|---|
| Protein accession | YP_001535489 |
|---|
| Protein GI | 159036236 |
|---|
| COG category | [G] Carbohydrate transport and metabolism
[J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG0143] Methionyl-tRNA synthetase
[COG0662] Mannose-6-phosphate isomerase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 23 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 11 |
|---|
| Fosmid unclonability p-value | 0.755013 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGCTGGTCG CCGGCATTCC GCGTTCCGTC AGCGAGATGG AAGCACCGAC GTTCGTCCGC
AGCAGCGCCC CGCCGTGGGC CGACGTCACC CGGCCGCCCT TCAACGTCAC CCGGGTGACG
CTGCGGCCGG GAGAAACCAC CGCTGCGCAC AATCACCACG ACAACGAGGT CTGGATCGTC
CTGGCCGGGC GGGGCCTGGT CCGGTCCGAT GGCGCCGCCG AGCGTGTGGT CGCGGGTGAC
ACGGTGTACC TCACGCCGCT GGCGACGCAC ACCCTGCACA ACGAGGCGAT GGAGCAGCCC
CTGACGTTCC TCAGTGTCTG GTGGGAGGAC ATGGACTCGC TCGCCGAGGC GCACTCCGCG
CGAGCCACCG CCAGCACCAC GGACGACCGG CCGGTCCTGC TACTCCCGTC CTTCCCGACC
CCCAACGGAG AACTGCACCT CGGTCATCTG GCCGGGCCGT ACCTGGGGGC CGACATCGCG
CGGCGGGCGT TGGCGGCCAC CGGAACCCCG GTACACCTGC TGCTCGGCAC GGTCGGCCAC
CAGAGCCAGG TGGCGGCCGC CGCGACCGCA GCCCAGGTCT CCTTCCACAC GTTGGCCGAG
CAGAACACCG ACGCAATCAT GGCCGGGCTG GCCGCCGCGG GAGCCGAGTG GGACGTCTTT
GTGCGGCCCA CCTCGCCGGA GTATCCGGCG CTGGCCCGGC GGGTGTTCGA GCGGCTGCGC
GACGACGGTG TGGTCCTCAC CCGGACCACA CCGACCCATC ACTGCCCCCA CTGCGACCGC
TTCCTGTTCG AGGCGTTTCT CGCCGGCGCC TGCCCGCACT GCGGCTCGTA CGACACCGCG
GGCATCGAGT GCGAGTCGTG CGCGCTGCCC TTCGCCGACA CGGACCTCAT CGACGTCACC
TGCGCCACGT GCGGATCCCC GGCCGAGCGT AGGCCGCTCA CCCGGTACTT CCTGCCGCTG
GAGCCGCTGC GGGACCGGCT GACCGCCTAC TTGCGGACGG TGCGCATGGG TTCGCGGCTG
GCCGGCTACG TCGACCGGGT GCTGGCCAAC CGACTGCCGG ACATGCTGGT CAGCATCGTG
GCCGACGATG GCATCGAGGT TCCCGGCACG GACGGCCAGC GGCTGTACTC GGCGTTCGAG
CTCGCCGCCC GCTATCTGAC CGCAGTCGAC CGGCTGGCCC GGGATCAGGG TGAGTCGGGT
TGGGAGTCGT ACCTGACCGG GCGTCGACCG CGGACGGTTC TGTTCTTCGG CTTCGACAAC
GCGTACCTGC GCACCATCGT GTTCCCCGCA GTCCTGGGCG CGTTCACCGA TCTCGCGCAG
TTGCCCGACA CGCTGGTAAG CAACGAGTTC TACGAACTCG ACGGCGCGAA GTTCTCCACC
GGCCGCCGCC ATGCCATCTG GGCCCGGGAC GCCTTCGACG ACAAGAGCCG GGACCGGCTG
CGGCTCTATC TGGCCGCCAC CCGACCGGAG TACCGCCGCA GGAGCTTCTC GACGGCCGAG
TACGACCTCT TCGTCCAGCA CGAGCTGGTG GAGGGCCTCG ACGGCTGGCT CGGTGGGATC
AACGCCCGGC TGGATCGGCA CTTCGCTGGC GCCGCTCCCG AAGCGGGCAG CTGGATCCCT
GAGGCCGAGG AGTTCTACGG CCGGATCCGA GCGCTGCACG CCGAGGCCGG ATCGGCCTTG
GGGCTGGGTC GATTCTCCCC GGCCACCGCG GTCGCGGCGG TGTTGTCGTT CGTCGCGGCG
GGCCGGCGTT TCGGGGAGGT GGCCGAGGAC ATCCTGGCCG CTCCCACCCT CACCGGCCCG
GCACGTACCT GCATGGCCCT CGAGCTGATG GCCGTCCGGA CGGTCGCGGA GGTCCTCCGC
CCGCTCGTAC CCGGCGCCGC CGACCGGCTC GCCGGGCAGC TCGGCGGGGT GGGAACGGCC
ACCAACCCCG AGTGGGTCAG GCCCGGTACG CCGGCCCGCG TCAGCGCCCT GTTCTCCTGA
|
|---|
| Protein sequence | MLVAGIPRSV SEMEAPTFVR SSAPPWADVT RPPFNVTRVT LRPGETTAAH NHHDNEVWIV
LAGRGLVRSD GAAERVVAGD TVYLTPLATH TLHNEAMEQP LTFLSVWWED MDSLAEAHSA
RATASTTDDR PVLLLPSFPT PNGELHLGHL AGPYLGADIA RRALAATGTP VHLLLGTVGH
QSQVAAAATA AQVSFHTLAE QNTDAIMAGL AAAGAEWDVF VRPTSPEYPA LARRVFERLR
DDGVVLTRTT PTHHCPHCDR FLFEAFLAGA CPHCGSYDTA GIECESCALP FADTDLIDVT
CATCGSPAER RPLTRYFLPL EPLRDRLTAY LRTVRMGSRL AGYVDRVLAN RLPDMLVSIV
ADDGIEVPGT DGQRLYSAFE LAARYLTAVD RLARDQGESG WESYLTGRRP RTVLFFGFDN
AYLRTIVFPA VLGAFTDLAQ LPDTLVSNEF YELDGAKFST GRRHAIWARD AFDDKSRDRL
RLYLAATRPE YRRRSFSTAE YDLFVQHELV EGLDGWLGGI NARLDRHFAG AAPEAGSWIP
EAEEFYGRIR ALHAEAGSAL GLGRFSPATA VAAVLSFVAA GRRFGEVAED ILAAPTLTGP
ARTCMALELM AVRTVAEVLR PLVPGAADRL AGQLGGVGTA TNPEWVRPGT PARVSALFS
|
|---|
| |