| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sare_0520 |
|---|
| Symbol | |
|---|
| ID | 5707122 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Salinispora arenicola CNS-205 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009953 |
|---|
| Strand | + |
|---|
| Start bp | 590092 |
|---|
| End bp | 590841 |
|---|
| Gene Length | 750 bp |
|---|
| Protein Length | 249 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 68% |
|---|
| IMG OID | 641270046 |
|---|
| Product | ABC transporter related |
|---|
| Protein accession | YP_001535440 |
|---|
| Protein GI | 159036187 |
|---|
| COG category | [G] Carbohydrate transport and metabolism
[M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG1134] ABC-type polysaccharide/polyol phosphate transport system, ATPase component |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 19 |
|---|
| Plasmid unclonability p-value | 0.940922 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 6 |
|---|
| Fosmid unclonability p-value | 0.00175385 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGGCCGATC CGATCATCGA GGCGGCGGGG CTGGGAATCC GGTTCGTCCG GAACCGTCGC
CGGCAACTGC GGCTGCGGGA CCTCGCCCTG CACCGGGGGC GTCGCGGCGA CCACGCCGAC
GGTCGGTTCT GGCCGCTGCG GGACCTGACC TTCTCGATCG AGGCCGGTGA CACGGTTGGC
GTGATCGGCC GTAACGGCAC CGGCAAGAGC ACTCTGCTGC GGCTCATCGC CGGCGTGCTG
ATACCCGATG AGGGCTGGAT CACCGTTCGG GGCGCCGTCG CCCCGCTGCT GGAGCTCTCC
GCCGGCTTCT CCGCCGAGCT GACCGGCCGG GAGAACCTGC ACCTGGTCGG TGGCCTACAC
GGTCTGTCGC CGAGCTACCT GCGCCGCCGC GTGGAGGAGA TCGTGTCGTT CGCGGGAAAA
CAGGTGGAGC AGGCCCTCGA CACGCCGGTG CGACACTATT CGTCCGGTAT GAAGGTCCGG
CTCGGGTTCG CGATCATCTC GCACCTGCCG CACCCGGTGT TGCTGGTGGA CGAGGTAACC
GCGGTTGGGG ACGCCGAATT CCGCCAGAGG TGCTATGCGA CGATCGATCG TCTGCTCGGA
GAGGGGCGCA CTCTGGTGCT GGTATCACAC AACGAACAGG ACCTGACTCG GTTCTGCCGT
CGCGGGTTCT ACCTGGACGC CGGCCGGATG GTTGTCGACG GGACGATGGC CGAGGCGTTG
GCCGCGTACC ACAGGGCGGT GGCTCGGTGA
|
|---|
| Protein sequence | MADPIIEAAG LGIRFVRNRR RQLRLRDLAL HRGRRGDHAD GRFWPLRDLT FSIEAGDTVG
VIGRNGTGKS TLLRLIAGVL IPDEGWITVR GAVAPLLELS AGFSAELTGR ENLHLVGGLH
GLSPSYLRRR VEEIVSFAGK QVEQALDTPV RHYSSGMKVR LGFAIISHLP HPVLLVDEVT
AVGDAEFRQR CYATIDRLLG EGRTLVLVSH NEQDLTRFCR RGFYLDAGRM VVDGTMAEAL
AAYHRAVAR
|
|---|
| |