Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sare_0518 |
Symbol | |
ID | 5707120 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Salinispora arenicola CNS-205 |
Kingdom | Bacteria |
Replicon accession | NC_009953 |
Strand | + |
Start bp | 587811 |
End bp | 589208 |
Gene Length | 1398 bp |
Protein Length | 465 aa |
Translation table | 11 |
GC content | 70% |
IMG OID | 641270044 |
Product | L-serine dehydratase 1 |
Protein accession | YP_001535438 |
Protein GI | 159036185 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG1760] L-serine deaminase |
TIGRFAM ID | [TIGR00720] L-serine dehydratase, iron-sulfur-dependent, single chain form |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 12 |
Plasmid unclonability p-value | 0.166535 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 4 |
Fosmid unclonability p-value | 0.000152397 |
Fosmid Hitchhiker | No |
Fosmid clonability | decreased coverage |
| |
Sequence |
Gene sequence | ATGATCAGCA TCTTCGACCT TTTCAGTGTC GGTATCGGTC CGTCCAGCTC GCACACCGTC GGGCCGATGC GCGCCGCCCG GACGTTCGTC ACCGGGCTCA AGGCCGACGG GCTGCTCACC GAGACGGTAC GGATCCGTGC CGAACTGTTC GGCTCGCTGG GTGCGACCGG TCACGGTCAC GGCAGCGACC GGGCGGTCCT GCTCGGGCTT GCCGGTGAGA CACCGGAAAC GGTCGACACC GACGCCGCCG AGGCGTGGAT CGGTCTGGTC CGTGCCGAGC AGCGGATCGC GCTGCTCGCC GCACACGAGA TCGACTTCGA CCCGGACCGG GACCTCGTGC TGCACCGCCG CCGGTCGCTG CCGTACCACC CGAACGGGAT GACCTTCGCC GCCTACGACC TGACCGGCGG CGAGATCCGA GCCCGCACGT ACTACTCGGT CGGTGGGGGT TTCGTCGTCG ACGAGGCGGC CGCGGGAGCG GGCCGGATCA GCTCGGACAC CACTGCGGTA CGCCACCCCT TCTCGACCGG CGCGGAGCTG CTGGCGGTGA CTCGGGAGAC CGGGCTGTCG ATCAGCGAGG TGATGCTGGC CAACGAGCTG TCCTGGCGGA GCGAGCGTGA GGTACGCGCC GGCCTGCTGG AGATCTGGCG GGTGATGCGT GAGTGCGTGG CGCGGGGCTG CGAACGCGAG GGCGTCCTCC CGGGTGGGCT GCGGGTGCGG CGGCGGGCAG CCGAGCTGTA CCGCGGCCTG ATGGTGGACG CGGATCCGAT GCGGTCGGCG GCGGGTTTGG GGATGGTGGA TCCGCTGCGT GCGATGGACT GGGTGACCCT GTTCGCCCTC GCGGTCAACG AGGAGAACGC GGGTGGTGGC CGGGTGGTGA CCGCACCGAC CAATGGTGCG GCCGGCATCA TCCCGGCTGT ACTGCACTAC TACGACCGGT TCGGGCCGGG TGCCACCCCC GACGGTGTGG TGCGGTTCCT GCTCGCGGCC GGCGCGATCG GTGTGCTGTT CAAGGAGAAC GCCTCGATCT CCGGCGCTGA GGTGGGTTGC CAGGGCGAGG TGGGCTCGGC CTGTTCGATG GCGGCAGCCG GGCTGGCCGA GGCGCTGGGT GGCAGCCCGG AGCAGGTGGA GAACGCCGCC GAGATCGGCA TGGAACACAA CCTGGGACTG ACCTGCGACC CGGTCGGCGG CCTCGTGCAG ATCCCCTGCA TCGAACGGAA CGCGGTGGCT AGCATCAAGG CGATCACGGC GGCCCGGCTC GCACTGCGGG GTGACGGCGT GCACCATGTC TCGCTCGACA AGGTCATCAA GACCATGCGC GAGACCGGGG CGGACATGAA GGTCAAATAC AAGGAGACGG CACGGGGAGG TCTCGCCGTC AACGTGATCG AGTGCTGA
|
Protein sequence | MISIFDLFSV GIGPSSSHTV GPMRAARTFV TGLKADGLLT ETVRIRAELF GSLGATGHGH GSDRAVLLGL AGETPETVDT DAAEAWIGLV RAEQRIALLA AHEIDFDPDR DLVLHRRRSL PYHPNGMTFA AYDLTGGEIR ARTYYSVGGG FVVDEAAAGA GRISSDTTAV RHPFSTGAEL LAVTRETGLS ISEVMLANEL SWRSEREVRA GLLEIWRVMR ECVARGCERE GVLPGGLRVR RRAAELYRGL MVDADPMRSA AGLGMVDPLR AMDWVTLFAL AVNEENAGGG RVVTAPTNGA AGIIPAVLHY YDRFGPGATP DGVVRFLLAA GAIGVLFKEN ASISGAEVGC QGEVGSACSM AAAGLAEALG GSPEQVENAA EIGMEHNLGL TCDPVGGLVQ IPCIERNAVA SIKAITAARL ALRGDGVHHV SLDKVIKTMR ETGADMKVKY KETARGGLAV NVIEC
|
| |