| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sare_0447 |
|---|
| Symbol | |
|---|
| ID | 5705317 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Salinispora arenicola CNS-205 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009953 |
|---|
| Strand | + |
|---|
| Start bp | 512289 |
|---|
| End bp | 514415 |
|---|
| Gene Length | 2127 bp |
|---|
| Protein Length | 708 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 73% |
|---|
| IMG OID | 641269972 |
|---|
| Product | ATP-dependent DNA helicase RecQ |
|---|
| Protein accession | YP_001535367 |
|---|
| Protein GI | 159036114 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG0514] Superfamily II DNA helicase |
|---|
| TIGRFAM ID | [TIGR00614] ATP-dependent DNA helicase, RecQ family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 7 |
|---|
| Plasmid unclonability p-value | 0.0452326 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 2 |
|---|
| Fosmid unclonability p-value | 0.00000647403 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | decreased coverage |
|---|
| |
Sequence |
| Gene sequence | ATGGCGGTAC GTGAGCAGGC CGAGACGGTG CTGCGGCGGT TGGCCGGGGA ACACGCCCGG
CTCCGCGACG ACCAGTGGCG GGCGATCGAG GCGCTGGTGG TCGACCGGCG GCGGGTGCTC
TGCGTCCAGC GCACCGGTTG GGGGAAGTCG GCGGTCTACT TCGTGGCCAC CGCGCTGCTG
CGGGCGGCCG GCGAGCACGG GCCCACCGTC ATCGTCTCGC CGTTGCTGGC GTTGATGCGC
AACCAGGTCG ACTCGGCCGC TCGGGCCGGT ATCCGGGCGC GGACCATCAA CTCCGCGAAC
CTCGACGAGT GGGACGAGAT CACCGGAGAG ATCCACGCCG GAACGGTGGA CGTGCTCCTG
ATCAGTCCGG AACGGCTCAA CAACCCCGAC TTCCGGGACA CCGTACTGCC GAAGCTGGCG
GCCACCACCG GGCTGCTCGT GGTGGACGAG GCGCACTGCG TCTCCGACTG GGGACACGAC
TTCCGCCCCG ACTATCGCCG GTTGCGGACG TTTCTCGGCA ACCTGCCGGT CGGCACGCCG
GTCCTCGCCA CCACGGCCAC CGCCAACGCC CGGGTCACCC AGGACGTCGC CGAGCAACTC
GGCGATTCGT CCCGGCCCGG GGTGGGGCCC GAGGCACTGG TGCTGCGGGG CAGTCTTGAC
CGGGAGTCGC TGCGGCTCGG GGTGGTCGAC CTGCCCGGCC CGGCGTACCG GCTGGCCTGG
CTCGCCGACC ACCTGGAGGA CCTGCCGGGC TCCGGCATCG TCTACACGCT GACGGTGGCT
GCGGCAGCGG AGACCGCCGA GTTCCTGCGG TCCCGGGGCT ACGCGGTGGC GTCGTACACC
GGTCAGGCCG ACGACGCGGA CCGCCGCGCC GCCGAGCAGG ACCTTCTCGA CAACAAGATC
AAGGCATTGG TGGCCACCAG CGCGCTCGGG ATGGGGTTCG ACAAGCCGGA CCTCGGGTTC
GTGGTGCACC TCGGCGCCCC ACCCTCTCCC ATCGCCTACT ACCAACAGGT CGGCCGGGCC
GGCCGTGCTG TTGTCCACGC CGAGGTGCTG CTGCTGCCCG GCGGCGCCGA GGACGCCGCC
ATCTGGCGGT ACTTCGCCTC GCTCGCCTTC CCACCGGAGA GTCAGGTGCG GACGGTGCTG
GCGGCGCTGC CCACCGACCG CCCACTCTCC ACGCAGGCAC TCGAACCGAT GGTGGACCTG
CGCCGTACCC GGCTGGAGCT GATGCTCAAG GTTCTGGACG TGGACGGCGC GGTCCGCCGG
GTACGCGGGG GTTGGGTCGC CACCGGTGCA CCGTGGACCT ACGACGAGGC TCGATTGCGC
CGGGTCGCCG CGGCCCGCAC CGCCGAACAG GCGGCGATGC GGGAATACGC CACCACCCCT
GGCTGCCGCC TGCGGTACCT CCGGGAGTGC CTGGACGACG TCGCCGCGAC CGACTGTGGG
CGGTGCGACC GCTGCGCCGC ACCGACCTTC CAGGCCGATG TGTCCGATGA CGCCCTGCGG
GCCGCGGAGG CCTTCCTCGG CCGTCCCGGG CTCGGAATCC CGCCGAAGAA GCTCTGGCCG
ACCGGCCTGG CCGCGGTGGG CGTTCCGCTG AAGGGGCGGA TCGCCCTCCC GGAGCAGGCG
CTGCCCGGTC GGGCCGTCGG GCGCCTGTCC GACCTCGGCT GGGGCGGGCG ACTACGCGAA
CTGGTCGGGC CGGACGCGGT CGACGCGGAC GTGCCGGACG ACGTGGTCGC CGCCGTGGTC
GAGGTGCTCC GGGCGTGGGC GCATGGCGCC GATCCGTGGC CGCGTCGCCC GGTCGGGGTG
GTCGCGATCG GCTCCCACCG CCGAGCCCGG CTGGTCGCCT CGCTCGCCGG TCGGATCGCC
GCAGTGGGCC GGATGCCGCT GTTCGGCACC GTCGCGGTGG CTGCCGACGG CGGGCCCCGC
GGCAACAGCG CGCAACGGGT ACGCGCCCTG CACGGCTCGG TGGCCCTGCC GCCGGAGCTG
GCCGGGGCTC TTGCCGGGCT GGACGGTCCG GTGCTGCTCG TCGACGACCT GGTCGACTCG
GGGTGGACCA TGACGATGGT GGCCCGGGAA CTGCGCCGAG CGGGAGCGAC GGACGTGCTC
CCGCTCGCCC TGGCGGTCGC CGGTTGA
|
|---|
| Protein sequence | MAVREQAETV LRRLAGEHAR LRDDQWRAIE ALVVDRRRVL CVQRTGWGKS AVYFVATALL
RAAGEHGPTV IVSPLLALMR NQVDSAARAG IRARTINSAN LDEWDEITGE IHAGTVDVLL
ISPERLNNPD FRDTVLPKLA ATTGLLVVDE AHCVSDWGHD FRPDYRRLRT FLGNLPVGTP
VLATTATANA RVTQDVAEQL GDSSRPGVGP EALVLRGSLD RESLRLGVVD LPGPAYRLAW
LADHLEDLPG SGIVYTLTVA AAAETAEFLR SRGYAVASYT GQADDADRRA AEQDLLDNKI
KALVATSALG MGFDKPDLGF VVHLGAPPSP IAYYQQVGRA GRAVVHAEVL LLPGGAEDAA
IWRYFASLAF PPESQVRTVL AALPTDRPLS TQALEPMVDL RRTRLELMLK VLDVDGAVRR
VRGGWVATGA PWTYDEARLR RVAAARTAEQ AAMREYATTP GCRLRYLREC LDDVAATDCG
RCDRCAAPTF QADVSDDALR AAEAFLGRPG LGIPPKKLWP TGLAAVGVPL KGRIALPEQA
LPGRAVGRLS DLGWGGRLRE LVGPDAVDAD VPDDVVAAVV EVLRAWAHGA DPWPRRPVGV
VAIGSHRRAR LVASLAGRIA AVGRMPLFGT VAVAADGGPR GNSAQRVRAL HGSVALPPEL
AGALAGLDGP VLLVDDLVDS GWTMTMVARE LRRAGATDVL PLALAVAG
|
|---|
| |