Gene Sare_0262 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSare_0262 
Symbol 
ID5705277 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSalinispora arenicola CNS-205 
KingdomBacteria 
Replicon accessionNC_009953 
Strand
Start bp289200 
End bp290702 
Gene Length1503 bp 
Protein Length500 aa 
Translation table11 
GC content72% 
IMG OID641269790 
ProductEmrB/QacA family drug resistance transporter 
Protein accessionYP_001535185 
Protein GI159035932 
COG category[G] Carbohydrate transport and metabolism 
COG ID[COG2814] Arabinose efflux permease 
TIGRFAM ID[TIGR00711] drug resistance transporter, EmrB/QacA subfamily 


Plasmid Coverage information

Num covering plasmid clones11 
Plasmid unclonability p-value0.0858399 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.0004758 
Fosmid HitchhikerNo 
Fosmid clonabilitydecreased coverage 
 

Sequence

Gene sequence
ATGACGCCAC CCTCTCTCCG GCTGCGCACT CCCGCAGGGG TTGGGACACT GCTCGCTGCG 
GTGCTCGCCT CCGGCATGGT CTTCCTCGAC GCCACCGTGG TCAACGTGGC ACTTCCCCGT
CTCGGCGACG ACCTCGACGC CACCGTTTCG GATCTGCAGT GGACGGTCAA TGGCTACCTG
CTGATGCTCG CCGCCTTCGT GCTGCTGGGT GGCGCGCTCG GCGACCGGTT CGGCCGGCGG
CGGGTCTTCC TGCTCGGGGT GGTGTGGTTC ACCGTCGCGT CGGTGCTGTG CGGGCTGGCC
CAGGACACCG GGCAGCTCAT CGCGGCCCGG CTCTTGCAGG GCGCCGGAGC GGCCCTGCTC
ACTCCCGGCT CCCTGTCGGT CCTGCAGGCC AGCTTCCACC CGGATGACCG GGGGCGGGCC
ATCGGTGCCT GGGCCGGCTT CTCCGGCGTG TCCACCGCGC TTGGCCCGTT CGTCGGCGGC
TGGCTGATCG ACGAGCTCTC CTGGCGGTGG ATCTTCTTCC TCAATGTGCC GTTGGCGGTG
CTGGTGGTGC TGGCCGCCCT GCGCTGGGTG CCGGAGAGCC GGGACGAGGA CGTGTCGCGT
ACCAGGACCG GGGAGTCGGG TCGCCGCCGA TTCGACGTGC TCGGCGCGCT GTTGGGGGCG
GTCGCCCTGG CCGGGGTGAC GTTCGCCTTG ATCGACGCAC CGGCTCGGGG CGTCGCGTCC
CGATCGGTGT TGCTCGCCAT CGCGGCCGGG GTGCTCGGCT CGGTGGCCTT CGTGCTGGTC
GAGCGCCGCC GTGGGGAGAC CGCGATGCTG CCCACCGGCC TGTTCAGCAG TCGGCTGTTC
TCCGTGCTGA ACATCTTCAC CGTGGTGATC TACGCGGCGC TCGGCGGGTT CACCTTCTTC
GTTGCCGTCT ACCTCCAGAA CGTAGCCGGC TGGTCGGCGC TGGGCACCGG CCTCGCCCTG
CTACCGGTGA CCGTCCTGCT GCTGGTCGGC TCACCGCTGG CTGGTGATCT GGCGACCCGG
ATCGGGCCAC GGCTTCCGTT GGTCGTGGGG CCGGTGGTGT CCGCCGCCGG GCTGATCCTG
CTCCGTCAGG TGGGGGCGGA CGCGTCGTAC TGGCGGGACG TGCTTCCGGG GGTGGTTCTC
TTCGGGGTCG GACTGACCCT GGTGGTGGCG CCGTTGACGG CTTCCGTGCT GGCCGCCGTC
GCCGATCGCT TCGCCGGCGT GGCGAGCGGC TTCAACAACG CCGCCTCGCG CGCTGGCGGG
CTGCTCGCCG TGGCTGCCCT GCCGCTACTG GTCGGTCTCT CCGGCACCGA CTATGAGCGG
CCGGACGAGT TGACAAGCGC CTACCGTGGA GCGTTGGCCT GGTGCGCCGG GCTGCTGCTG
GTGGGCGCTG TGTTGGCTGC GGTCTTCGTG CACCGCCCGC GCCGGGTGCC GCCACCGTCG
CAGCCCTGCC AGTCGCTCCC CGCCGCCACC GGGCCCGAGC GGAGGGGAGG GGAGTCTTCG
TGA
 
Protein sequence
MTPPSLRLRT PAGVGTLLAA VLASGMVFLD ATVVNVALPR LGDDLDATVS DLQWTVNGYL 
LMLAAFVLLG GALGDRFGRR RVFLLGVVWF TVASVLCGLA QDTGQLIAAR LLQGAGAALL
TPGSLSVLQA SFHPDDRGRA IGAWAGFSGV STALGPFVGG WLIDELSWRW IFFLNVPLAV
LVVLAALRWV PESRDEDVSR TRTGESGRRR FDVLGALLGA VALAGVTFAL IDAPARGVAS
RSVLLAIAAG VLGSVAFVLV ERRRGETAML PTGLFSSRLF SVLNIFTVVI YAALGGFTFF
VAVYLQNVAG WSALGTGLAL LPVTVLLLVG SPLAGDLATR IGPRLPLVVG PVVSAAGLIL
LRQVGADASY WRDVLPGVVL FGVGLTLVVA PLTASVLAAV ADRFAGVASG FNNAASRAGG
LLAVAALPLL VGLSGTDYER PDELTSAYRG ALAWCAGLLL VGAVLAAVFV HRPRRVPPPS
QPCQSLPAAT GPERRGGESS