| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sare_0108 |
|---|
| Symbol | |
|---|
| ID | 5707057 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Salinispora arenicola CNS-205 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009953 |
|---|
| Strand | - |
|---|
| Start bp | 121115 |
|---|
| End bp | 122104 |
|---|
| Gene Length | 990 bp |
|---|
| Protein Length | 329 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 69% |
|---|
| IMG OID | 641269634 |
|---|
| Product | transketolase central region |
|---|
| Protein accession | YP_001535034 |
|---|
| Protein GI | 159035781 |
|---|
| COG category | [C] Energy production and conversion |
|---|
| COG ID | [COG0022] Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, beta subunit |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 18 |
|---|
| Plasmid unclonability p-value | 0.741994 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 4 |
|---|
| Fosmid unclonability p-value | 0.000246371 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGGCCACGG AGACCCTCAC CCTCGGCAAG GCCCTCAACG CCGGGATGCG CAAGGCCCTG
GAGAACGACC CGAAGGTCGT CATCATGGGC GAGGACGTCG GCAAGCTCGG TGGTGTCTTC
CGGATCACCG ACGGGCTGCA GAAGGACTTC GGCGACCAGC GGGTGATCGA TACCCCGCTC
GCCGAGTCGG GCATCATCGG TACCGCAATC GGCCTGGCCA TCCGTGGCTA CCGGCCGGTC
TGCGAGATCC AGTTCGACGG TTTCGTCTAC CCGGCGTACG ACCAGATCGT GTCGCAGGTG
GCGAAGATGC ACTACCGCTC CCGCGGCAAG CTCAGGATCC CGATGGTGAT CCGCATCCCG
TTCGGTGGCG GCATCGGGGC GGTGGAGCAC CACTCCGAGT CGCCCGAGGC CTACTTCGCG
CACACACCCG GGCTCAAGGT CGCCACCTGC GCCAGCCCGC AGGACGCGTA CGTGATGATC
CAGCAGGCCA TCGCGTCGGA CGACCCGATC GTGTTCCTCG AACCCAAGCG CCGCTACTGG
GAGAAGGGGC CGGTCGAGGT CGACGGGCCG CTGCCGGAGG CGTACCCGCT GCACGCCGCC
CGCGTCGCGC GGCCGGGCAC CGACGCGACC CTGATCGGGT ACGGGCCGAT GGTGCGTACC
TGCCTGGACG CGGCGACCGC CGCCGCCGAG GACGGCCGTG AGTTGGAGGT CATCGACCTA
CGCACGCTCG CCCCGCTGGA CCTGGGCCTG GTGTACGAGT CGGTGCGCCG TACCGGTCGG
GCCGTGGTGG TGCACGAGGC ACCGTCGAAC ATCGGCCTCG GGGCCGAGGT CGCGGCCCGG
ATCACCGAGG AGTGCTTCTA CTCCCTGGAG TCCCCGGTGC TACGGGTTAC CGGCTTCGAC
ATCCCCTACC CGGCCTCCCG GGTGGAGGAG GAGTACCTAC CCGACCTTGA CCGGGTGCTC
GACGCCGTCG ACCGCACCTT CGGCTGGTGA
|
|---|
| Protein sequence | MATETLTLGK ALNAGMRKAL ENDPKVVIMG EDVGKLGGVF RITDGLQKDF GDQRVIDTPL
AESGIIGTAI GLAIRGYRPV CEIQFDGFVY PAYDQIVSQV AKMHYRSRGK LRIPMVIRIP
FGGGIGAVEH HSESPEAYFA HTPGLKVATC ASPQDAYVMI QQAIASDDPI VFLEPKRRYW
EKGPVEVDGP LPEAYPLHAA RVARPGTDAT LIGYGPMVRT CLDAATAAAE DGRELEVIDL
RTLAPLDLGL VYESVRRTGR AVVVHEAPSN IGLGAEVAAR ITEECFYSLE SPVLRVTGFD
IPYPASRVEE EYLPDLDRVL DAVDRTFGW
|
|---|
| |