| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dshi_3573 |
|---|
| Symbol | |
|---|
| ID | 5713804 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Dinoroseobacter shibae DFL 12 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009952 |
|---|
| Strand | - |
|---|
| Start bp | 3763345 |
|---|
| End bp | 3764166 |
|---|
| Gene Length | 822 bp |
|---|
| Protein Length | 273 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 60% |
|---|
| IMG OID | 641269502 |
|---|
| Product | putative ABC-2 type transporter |
|---|
| Protein accession | YP_001534907 |
|---|
| Protein GI | 159046113 |
|---|
| COG category | [G] Carbohydrate transport and metabolism
[M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG1682] ABC-type polysaccharide/polyol phosphate export systems, permease component |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 24 |
|---|
| Plasmid unclonability p-value | 0.337642 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 43 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGTTCTACG TCAAGGAAAG CTCGTCCTCG CTGGCCGGGG CCTATCGCAC TCTGACGCTG
ATTTATCACG CCAGCGTGCG GAGCGTGCGC ATCACCCATG GCAATGCCAT GATGAGCCTG
TTCCTGAACG TGTTCCAGAC CATCGTCTTC GTGATGGTGT TCTACCTGAT CTTTCAGTTG
ATGGGCATGC GCAGCGCCGG TTTGCGCGGC GATTTCATGA TGTACATCCT GACCGGCGTG
TTCCTGTTCA TGATGTTCAA CAAGACCATG GGCGCGGTCT ATGGCTGCGA GGGGCCGACC
TCGCCGATGA TGAAGCATCG CAACATGAAC ACCATGATCA GCATCGGCGC CGCCATGCTG
AGCAGCCTGT ACATTCAGGT GCTGTCGCTG TTGATCGTGC TGGTTGGCTA TCACCTGGTG
ACCCACAATG TGGAGATTGC CGACCCCGGG CGCGCGGGCC TGATACTGCT TCTCACCTGG
CTCAGCGGGG CCGGGATCGG CATGGTGTTT CTCGCCGCGA AACCCTGGGC GCCCGAGGCG
ACCAAGACCG TGCAGATGAT CTTCAGCCGG ATCAACATGT TCGCCAGCGG CAAGATGTTC
GTGGCCAATA CCCTGCCTGC CTTCATGCTG CCGCTTTTTG CCTGGAACCC GCTGTTCCAC
CTGATCGACC AGATGCGCGG CGCGGTATTC GTCAACTACC TGCCCCGCAA CACGAACCTG
GACTACCCGC TCTGGCTGAT GGTGGCGTGC CTGATGATCG GCCTGATGGG GGAGTTTCAC
ACCCGCCGCC GCGCTTCGCT GAGCTGGTCC GCGGGCAAAT AG
|
|---|
| Protein sequence | MFYVKESSSS LAGAYRTLTL IYHASVRSVR ITHGNAMMSL FLNVFQTIVF VMVFYLIFQL
MGMRSAGLRG DFMMYILTGV FLFMMFNKTM GAVYGCEGPT SPMMKHRNMN TMISIGAAML
SSLYIQVLSL LIVLVGYHLV THNVEIADPG RAGLILLLTW LSGAGIGMVF LAAKPWAPEA
TKTVQMIFSR INMFASGKMF VANTLPAFML PLFAWNPLFH LIDQMRGAVF VNYLPRNTNL
DYPLWLMVAC LMIGLMGEFH TRRRASLSWS AGK
|
|---|
| |