| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dshi_3572 |
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| Symbol | alkB2 |
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| ID | 5713803 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Dinoroseobacter shibae DFL 12 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009952 |
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| Strand | + |
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| Start bp | 3762679 |
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| End bp | 3763314 |
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| Gene Length | 636 bp |
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| Protein Length | 211 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 641269501 |
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| Product | alpha-ketoglutarate-dependent dioxygenase alkB |
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| Protein accession | YP_001534906 |
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| Protein GI | 159046112 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG3145] Alkylated DNA repair protein |
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| TIGRFAM ID | [TIGR00568] DNA alkylation damage repair protein AlkB |
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Plasmid Coverage information |
| Num covering plasmid clones | 29 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 44 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGAGAAAA AGCCGATTGT GCCCGATGCT ATTGCGCCGG ATTTGCGCCT GCGCGGGGTC
GCGATTTACA AGGGGTTTGT GGACCGCGCC GCGCAGGAAG CCCTGGTGGA GGATCTGCGC
GGGGTGGCCC GGGCGGCACC GTTCTATCGC CCGGTGACCC CGTCGGGCAA GGCGATGTCG
GTGCGTATGA CGGCGGCCGG ACGGTTCGGC TGGGTGTCCG ACCGCCAAGG CTATCGCTAT
GCGCCGACGC ATCCGGGCGG GGGCGCATGG CCGGATATTC CGAACTCGGT TCTCACGATC
TGGGACAGGC TCGTGCCGGA GGCGCGCAGG CCTGAGTGCT GCCTCGTGAA TTTCTACGAT
GCCCACGCGA AGATGGGCCT GCACCAGGAC CGGGACGAGG CCGATTTCAG CCAGCCGGTG
CTGTCGGTGT CTTTGGGCGA TGCGGCGCGG TTCCGGGTCG GGTCCACCAG CCGTGGGGGC
ACGACCGAAT CGCTTTGGCT CGAATCGGGC GATGTCGCAG TGATGGGCGG AGAGGCGCGG
CTGATCCATC ACGGGATCGA CCGGATCAAA CCGGGCAGCT CCACGCTCCT GCCCGAAGGC
GGGCGGATCA ACCTGACCCT CCGTGTGGTC ACCTGA
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| Protein sequence | MEKKPIVPDA IAPDLRLRGV AIYKGFVDRA AQEALVEDLR GVARAAPFYR PVTPSGKAMS
VRMTAAGRFG WVSDRQGYRY APTHPGGGAW PDIPNSVLTI WDRLVPEARR PECCLVNFYD
AHAKMGLHQD RDEADFSQPV LSVSLGDAAR FRVGSTSRGG TTESLWLESG DVAVMGGEAR
LIHHGIDRIK PGSSTLLPEG GRINLTLRVV T
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