Gene Dshi_3566 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagDshi_3566 
SymbolppiC 
ID5713797 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameDinoroseobacter shibae DFL 12 
KingdomBacteria 
Replicon accessionNC_009952 
Strand
Start bp3753294 
End bp3754136 
Gene Length843 bp 
Protein Length280 aa 
Translation table11 
GC content64% 
IMG OID641269495 
ProductPpiC-type peptidyl-prolyl cis-trans isomerase 
Protein accessionYP_001534900 
Protein GI159046106 
COG category[O] Posttranslational modification, protein turnover, chaperones 
COG ID[COG0760] Parvulin-like peptidyl-prolyl isomerase 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones34 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones46 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
GTGAACATCA TTCGGAAGCC CCTCGCCAGG CTCGCGCTTG GCCTGACCTT GCTGAGCCCC 
GTGGCCGTCC AGGCCCAGGA TGCCGACACG GTTCTGGCAA CCGTCGGCGG CGAGGAAATC
ACCCTCGGCC ACCTGATCGC TGTGGCAAGC AGTCTGCCCA CGCAATTCCA GCAACTGGCC
GACGATCGGC TGTATTCCGG CCTTCTGGAG CAGATGATCC GCCAGGTGGC CCTGGCGCAG
TCCATGGGCG ACTCGCTCTC CAAGGAGCTG GAGCTGTCGC TGGAAAGCCA ACGCTGGGCC
CTGATGGCGA ATTCGATCAT CGACGGCGCC ATCGAGGCCG CCGTGACCGA GGAGAGCGTG
CAGGCCTTGT ATGACGCGGA ATTCGGTAAC ATCGAGCCGG AGAAAGAATT CAACGCCTCT
CACATCCTGG TGGAAACCGA GGAGGAGGCC CAGGCACTGG TGACCGAACT CGAAGGCGGT
GCCGATTTCG CGGAACTGGC AAGAGCACGG TCCGTCGGCC CGTCGGGACC CAATGGCGGG
GAACTTGGCT GGTTCGGGCC GGGGATGATG GTGGCCCCGT TCGAAATGGC CGTCATCAGG
ATGGAACCCG GGACCGTATC CGAGCCGGTG GAAACGCAAT TCGGCTGGCA CGTGATCCGG
CTGAATGACA TCCGCGACTC TGCCGCCCAA CCCCTCGAAG AGGTACGGGG CAGGCTCGAA
GAGCGCTTGA GTGAAGAGGC GGCCCAGGAA GTCGTGGACT CGCTGGTCGC GGCAACCGAG
ATCACCCGGT CCGAGGCGGA GATCGACCCG GCCCTGATCC GCGACACTTC CCTCCTGGAC
TGA
 
Protein sequence
MNIIRKPLAR LALGLTLLSP VAVQAQDADT VLATVGGEEI TLGHLIAVAS SLPTQFQQLA 
DDRLYSGLLE QMIRQVALAQ SMGDSLSKEL ELSLESQRWA LMANSIIDGA IEAAVTEESV
QALYDAEFGN IEPEKEFNAS HILVETEEEA QALVTELEGG ADFAELARAR SVGPSGPNGG
ELGWFGPGMM VAPFEMAVIR MEPGTVSEPV ETQFGWHVIR LNDIRDSAAQ PLEEVRGRLE
ERLSEEAAQE VVDSLVAATE ITRSEAEIDP ALIRDTSLLD