| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dshi_3557 |
|---|
| Symbol | |
|---|
| ID | 5713788 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Dinoroseobacter shibae DFL 12 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009952 |
|---|
| Strand | + |
|---|
| Start bp | 3741883 |
|---|
| End bp | 3743700 |
|---|
| Gene Length | 1818 bp |
|---|
| Protein Length | 605 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 67% |
|---|
| IMG OID | 641269486 |
|---|
| Product | putative CBS domain and cyclic nucleotide-regulated nucleotidyltransferase |
|---|
| Protein accession | YP_001534891 |
|---|
| Protein GI | 159046097 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG2905] Predicted signal-transduction protein containing cAMP-binding and CBS domains |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 24 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 42 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | TTGCAGGACC TGACGAAGAT CCAGAGCTTT CTGGCCCATG TGCACCCCTA TGACAGCCTG
ACCGATGCGG AGCTTGCCAT CCTGGCCGGG CAGGTGGAGG TCGTCACACA GGCCGCGGGC
GAGAAGATCT ATACCCTCGG GGAGCCGTGT CGCGGGGTCT ATGTGATCGT GTCGGGCGAG
GTCGAGATCA CCGACGAGAC CGGCGCGCAA ATCTCGCAAC TGGGCAGCCG CAACAGTTTC
GGCGAACGCG GGCTGGCCCG CGACGGGGTG GCGGTGACCA ACGCCCGGGC GGCCAGCGAT
ACCGACATGC TGCTCGTGCC GGCGGAGGCG TTTCACGAGC TGGTCGACGT ACACCCGGCC
ATTGCCAAGT TTTTCAACCG GTCCCGCGGG GCCGAGACCC GCAAGACCGA TCTCGCCACG
GCGCGGATTT CCGAGCTGAT GACCCGGCAG GTGCTGGGCA TCACCGCCGA CGCCACCATC
CAGCGCGCCG CCCATCTGAT GCATGCCAAG AAGGTGTCGT CGCTGGCCGT GCTCGAAGGC
GGGCGGCTGG TCGGTATCGT CACCGTGCGC GACATGGCGC GCGTCGTCTC CGAAGGGCTG
GCGAACGATG CGCCGGTCTC GGAGGTGATG GCGCGCAAGA TCATCTCCCT GCCGCCCGAT
GCCCTGGGCT CGGATGTGCT GCATACCATG CTGGAGCGGC GGATCGGGCA TCTGCCGATC
ACCGACAAAG GCACGCTGGT GGGGATCGTC ACCCAGACCG ACCTGATCCG GTTCCAGGCG
CTGTCCTCGG CGCAGCTGGT CCATGACATC GTCTATGCCG ACACGCCTTC GGGCATCGCG
GCGGTGACCA AGCGCCTGCC GGAGCTGCTG GCGCAGCTGG TGGGTGCGGG CAACCCGCAC
GAGGTGGTCA CGCGCCTGAT CACCGATATC GCGGATGCCG CCACCCGACG CCTGCTGGCG
CTGGCCGAGG AAAAGCTCGG CCCGCCGCCG GTGCCCTATC TGTGGCTGGC CTGCGGCAGT
CAGGGCCGGC AGGAGCAGAC GGGCGTGTCC GACCAGGACA ACTGCCTGAT CCTCGACGAC
GCGATGACGC CCGAGATGGA CGGCTATTTC AAGGCGCTGG CCAGCTTCGT CTGCGACGGG
CTGAACGCGG CGGGATACGT GTATTGTCCT GGCGACATGA TGGCCACGGC GGATCGCTGG
CGCCAGCCGC TGCGGGTCTG GAAGCAGTAT TTCCAGGGCT GGATCGCCCA GCCCGACACC
GAGGCGCAGA TGCTCGCCTC GGTGATGTTC GACCTGCGGC CCATCGGCGG GGAGGACAGC
CTGTTCGCCA ACCTGCAGGA CGAGACCCTC GCGGCCGCCT CGGCCAACAG CATCTTCGTC
ACCCACATGA TCGCCAACTC GCTCAAGCAT ACGCCGCCGC TGGGCATGTT CCGGGGTTTC
GCCACGATCC GTTCGGGCGA GCACAAGAAC GCGCTGGACC TCAAGCATAA CGGGGTGGTG
CCCGTGGTCG ATCTCGGCCG GATCTACGCG CTGCGCGGGA GGCTGACGGC CGTCAACACC
CGGGCGCGGT TGCTTGCCGC CCGCGACGAG AAGGTGATCT CCCCCTCCGG GGCGGCGGAT
CTGCTGGATG CCTATGACCT GATCGCGGAA ACCCGGCTGC AACACCAGGC GCGACAGGTG
CGCGCCGGGG AGGCGCCGGA CAACTTCATG TCGCCGACCA CGCTATCGGA TTTCGAACGC
AGCCACCTGC GGGACGCCTT CGTGGTCATC CGCACAATGC AATCCGCCGC CGGGTCCGGT
CGCGGTGGCC TGGCCTGA
|
|---|
| Protein sequence | MQDLTKIQSF LAHVHPYDSL TDAELAILAG QVEVVTQAAG EKIYTLGEPC RGVYVIVSGE
VEITDETGAQ ISQLGSRNSF GERGLARDGV AVTNARAASD TDMLLVPAEA FHELVDVHPA
IAKFFNRSRG AETRKTDLAT ARISELMTRQ VLGITADATI QRAAHLMHAK KVSSLAVLEG
GRLVGIVTVR DMARVVSEGL ANDAPVSEVM ARKIISLPPD ALGSDVLHTM LERRIGHLPI
TDKGTLVGIV TQTDLIRFQA LSSAQLVHDI VYADTPSGIA AVTKRLPELL AQLVGAGNPH
EVVTRLITDI ADAATRRLLA LAEEKLGPPP VPYLWLACGS QGRQEQTGVS DQDNCLILDD
AMTPEMDGYF KALASFVCDG LNAAGYVYCP GDMMATADRW RQPLRVWKQY FQGWIAQPDT
EAQMLASVMF DLRPIGGEDS LFANLQDETL AAASANSIFV THMIANSLKH TPPLGMFRGF
ATIRSGEHKN ALDLKHNGVV PVVDLGRIYA LRGRLTAVNT RARLLAARDE KVISPSGAAD
LLDAYDLIAE TRLQHQARQV RAGEAPDNFM SPTTLSDFER SHLRDAFVVI RTMQSAAGSG
RGGLA
|
|---|
| |