| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dshi_3513 |
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| Symbol | crtD |
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| ID | 5713744 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Dinoroseobacter shibae DFL 12 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009952 |
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| Strand | - |
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| Start bp | 3691944 |
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| End bp | 3693542 |
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| Gene Length | 1599 bp |
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| Protein Length | 532 aa |
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| Translation table | 11 |
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| GC content | 71% |
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| IMG OID | 641269442 |
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| Product | methoxyneurosporene dehydrogenase |
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| Protein accession | YP_001534847 |
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| Protein GI | 159046053 |
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| COG category | [Q] Secondary metabolites biosynthesis, transport and catabolism |
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| COG ID | [COG1233] Phytoene dehydrogenase and related proteins |
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| TIGRFAM ID | [TIGR02734] phytoene desaturase |
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Plasmid Coverage information |
| Num covering plasmid clones | 23 |
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| Plasmid unclonability p-value | 0.705776 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 35 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | TTGGATCGGA ATGTGATGAC TCGCGCGCAA GACAAGGTCG TCGTGATCGG CGCGGGGATG
GGCGGATTGG CGTCGGCCAT CCGTCTGGCC CATGCCGGGT GCGATGTGAC GGTGCTGGAG
GCGCTGTCGG GGCCGGGGGG CAAGATGCGC ACCCTGCCGA GCGCGGCGGG GCCGGTGGAT
GCGGGTCCGA CGGTGATGAC CCTGCGCCCG ATATTCGAAT CGCTGTTCGC CGATGTGGAG
GCGGGTTTGT CGGACTACGT GACCCTGCAC CGAGAGACGG TGCTGGCGCG GCACTGGTGG
TCCGATGGCA GCACGCTGGA CCTGTTTTCC GATGCAGAGG CGTCCGAGGC GGCGGTGCGC
GCCTTCGCCG GCGCGCGGGA GGCGGCCGCC TTCGCCGCGT TCTCGGCTCA GGCGGCGAAG
CTGTTCGCGG CCTTCGACGG GCCGATGATG CAGAACCCGG CGCCGGATCT GGCGGGGCTG
ACGCGGCACG TGTTGGCGCA GCCTTCGGTG ATCCCGGCCA TGGGGCCGCT GACCACGCTG
GCGCGCAGCC TGGCCAAGCG GTTTCGCGAC CCGCGGTTGC AGCAGCTTTT CGGGCGCTAC
GCCACCTATG TGGGCGGCTC GCCCTATGCG TCGCCCGCGG TGCTGGCCCT GATCTGGCAG
GCCGAAGCGC AGGGCGTCTG GCGCGTGGAG GGCGGGATGC ATGCGCTGGC GCAGGGGCTC
GCGCGGCTCG CGGCGGAGAA GGGCGCGGAT CTGCGCTATG ATACCTGCGT TGCCCGGATC
GAGACGCAAG GCGGGCGTGT GGCGGGCGTG CATCTGACCG ATGGCGCCCG GATCGCGGCG
GACACGGTGG TGTTCAACGG GGATCCGCGC GCGCTGCATC TCGGCTTGCT GGGCCCGGCG
GCCAAGCCCG CCGTGGCGGC CCCGGGGGTC GCGGAGCGCT CGCTCTCGGC CTATGTGTGG
TCCTTCGCGG GCCAACCCGA GGGGCGCGAC CTGGTCCATC ACAACGTGTT TTTCGCGGAC
GATCCGGCGC GGGAGTTCGA CGATCTCGCG GCCGGGCGGA TGCCCCGGGA CGCGACCCTT
TACCTTTGTG CCGAGGATCG GGGCGCGGGG CTGACCCCCG CCGGGCCCGA GCGATTCGAG
GTCATCATGA ACGGCCCCCC GGTCGCCGGT GCGGCCGGTT TGCGGGACGA CCACGAGGAG
TTTCACGCAT GTCAGACGCA AGTCTTCACT CGCTTCGCAG CCATGGGGCT GCGATTCCCG
GAACGCCCCG GACGGGAGGC GTTGACCATG CCGCGGGACT TCGCGCGCCT GTTTCCCGGG
TCGGCCGGAT CCCTCTACGG GCGGAGCCCG CACGGGTTGA TGGCGGCGTT CCAGCGGCCC
CAGGCGCGCA CGAAGCTGCC GGGGCTGTAC CTGGCGGGGG GCGGGGCGCA TCCGGGGGCG
GGCATTCCGA TGGCGACCCT TTCCGGCAAG CACGCGGCCG CGGCGATCTT GAGCGACCGA
ACTTCAACCT CGACGTTCCG GCCGACGGCT ACGCGTGGTG GTATATCGAC GGGATCAGCG
ACTGCGGCAC CCGCGCGATC TCGATCATCG CTTTCATAG
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| Protein sequence | MDRNVMTRAQ DKVVVIGAGM GGLASAIRLA HAGCDVTVLE ALSGPGGKMR TLPSAAGPVD
AGPTVMTLRP IFESLFADVE AGLSDYVTLH RETVLARHWW SDGSTLDLFS DAEASEAAVR
AFAGAREAAA FAAFSAQAAK LFAAFDGPMM QNPAPDLAGL TRHVLAQPSV IPAMGPLTTL
ARSLAKRFRD PRLQQLFGRY ATYVGGSPYA SPAVLALIWQ AEAQGVWRVE GGMHALAQGL
ARLAAEKGAD LRYDTCVARI ETQGGRVAGV HLTDGARIAA DTVVFNGDPR ALHLGLLGPA
AKPAVAAPGV AERSLSAYVW SFAGQPEGRD LVHHNVFFAD DPAREFDDLA AGRMPRDATL
YLCAEDRGAG LTPAGPERFE VIMNGPPVAG AAGLRDDHEE FHACQTQVFT RFAAMGLRFP
ERPGREALTM PRDFARLFPG SAGSLYGRSP HGLMAAFQRP QARTKLPGLY LAGGGAHPGA
GIPMATLSGK HAAAAILSDR TSTSTFRPTA TRGGISTGSA TAAPARSRSS LS
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