| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dshi_3506 |
|---|
| Symbol | |
|---|
| ID | 5713737 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Dinoroseobacter shibae DFL 12 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009952 |
|---|
| Strand | - |
|---|
| Start bp | 3686571 |
|---|
| End bp | 3687404 |
|---|
| Gene Length | 834 bp |
|---|
| Protein Length | 277 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 70% |
|---|
| IMG OID | 641269435 |
|---|
| Product | nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase |
|---|
| Protein accession | YP_001534840 |
|---|
| Protein GI | 159046046 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG0388] Predicted amidohydrolase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 35 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 33 |
|---|
| Fosmid unclonability p-value | 0.600475 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCGCGCCG CTCTGGTGCA GATGACTTCC GGCGACGATC CGGAGGCGAA CCTGGCGCAA
CTGCAGGGGT TGGCGGCGCA GGCCGTGGCG GAGGGCGCGG GATTTGTCCT GAGCCCGGAG
GTGAGTAATT GCCTGTCCAC CAGCCGGACC CGGCAGCGTG CGGTGCTGCG GCGCGAAGCG
GACGATCCGA TGCTGGCGGC GATGCGGGAG TTCGCGGCGC GGCGGGGGGT TTGGGTGCTG
CTCGGCTCGC TGGCGGTGAC CACGGAGGAT GCGGAGGGGC GGTTCGCCAA CCGGTCGATC
CTGATCGATG CCGGGGGCGG GATCGCGGCG CGGTATGACA AGATCCACAT GTTCGACGTG
GCCGTGTCGG AGGCCGAGAC CTATCGCGAG AGCGACGGAT ACCGGCCCGG GGATCGTGCG
GTGCTGGCCG ACACGCCGTT TGGCAAGATC GGGATGACCG TGTGCTATGA CCTGCGATTT
CCGCATCTTT TCAGGGATCT GGCCCGAGCG GGGGCAGAGA TCCTGACGGT GCCCTCGGCC
TTCTCGCCGG TCACCGGGGC GGCCCATTGG GAGCCGCTGC TGCGGGCGCG CGCGATCGAA
TGCGGGGCCT GGGTTCTGGC GCCGGCCCAG ACCGGCACGC ACCCGGCGAC CCGGGGCAAG
GCGCGCAGCA CTCATGGGCA CAGCCTGGCC GTGGACCCCT GGGGGCGGGT GCTGGCCGAT
GGGGGGACCG CGCCGGGGGT GTGTTTCGTC GATCTGGACC GGACGGAAAT TGCCGCAGCG
CGGCGAAAAA TACCTTCCCT CACGGCGGAT GCCCCCTATG CTGACCCGGT ATGA
|
|---|
| Protein sequence | MRAALVQMTS GDDPEANLAQ LQGLAAQAVA EGAGFVLSPE VSNCLSTSRT RQRAVLRREA
DDPMLAAMRE FAARRGVWVL LGSLAVTTED AEGRFANRSI LIDAGGGIAA RYDKIHMFDV
AVSEAETYRE SDGYRPGDRA VLADTPFGKI GMTVCYDLRF PHLFRDLARA GAEILTVPSA
FSPVTGAAHW EPLLRARAIE CGAWVLAPAQ TGTHPATRGK ARSTHGHSLA VDPWGRVLAD
GGTAPGVCFV DLDRTEIAAA RRKIPSLTAD APYADPV
|
|---|
| |