| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dshi_3462 |
|---|
| Symbol | ham1 |
|---|
| ID | 5712520 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Dinoroseobacter shibae DFL 12 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009952 |
|---|
| Strand | - |
|---|
| Start bp | 3642968 |
|---|
| End bp | 3643582 |
|---|
| Gene Length | 615 bp |
|---|
| Protein Length | 204 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 60% |
|---|
| IMG OID | 641269391 |
|---|
| Product | putative deoxyribonucleotide triphosphate pyrophosphatase |
|---|
| Protein accession | YP_001534796 |
|---|
| Protein GI | 159046002 |
|---|
| COG category | [F] Nucleotide transport and metabolism |
|---|
| COG ID | [COG0127] Xanthosine triphosphate pyrophosphatase |
|---|
| TIGRFAM ID | [TIGR00042] non-canonical purine NTP pyrophosphatase, rdgB/HAM1 family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 34 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 53 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTCCCGGT TCAAGGACAA AACCCTGCTC GTCGCAAGTC ACAACAAGGG CAAAATCGAA
GAGATCGCGC ATCTGTTGGA GCCTTACGGC GTGCGGGTTA CCTCCGCCGC CGCGCACGGT
TTGTCCGAGC CGGAAGAGAC GGAAACCACT TTCGTCGGCA ATGCTCGCAT CAAGGCGCAT
TATGCCGCAA AAGAGACTGG GTTGCCTGCA CTGGCCGATG ACAGCGGCCT GGAGGTTCTC
GCACTCGATG GTGCACCCGG TGTCTACACG GCGGACTGGG CCGAGACACC GACCGGGCGG
GATTTCGAGA TGGCCATGGT CAAGGTCCAT GACGCCCTGA TTGCGAAAGG TGCGGAACGG
CCGTGGCGTG CGCGGTTCTG CTGCACTCTG GTGCTGGCAT GGCCCGACGG CACCGACATG
GTTTTTCCCG GGACGATGAA GGGACAACTG GTTTGGCCCA TGCGTGGCTC GCAAGGCCAT
GGATATGATC CGATGTTCCA ACCGGATGGC TACGCGCAGA CCTTCGGGGA AATGGACCGT
TGGGAAAAGA ACAAGGTCAG CCACCGGGCA GATGCGTTCC GGAAACTGAC CGTAGCCTGT
TTCTCAGAAG ACTGA
|
|---|
| Protein sequence | MSRFKDKTLL VASHNKGKIE EIAHLLEPYG VRVTSAAAHG LSEPEETETT FVGNARIKAH
YAAKETGLPA LADDSGLEVL ALDGAPGVYT ADWAETPTGR DFEMAMVKVH DALIAKGAER
PWRARFCCTL VLAWPDGTDM VFPGTMKGQL VWPMRGSQGH GYDPMFQPDG YAQTFGEMDR
WEKNKVSHRA DAFRKLTVAC FSED
|
|---|
| |