| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dshi_3423 |
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| Symbol | rpoE1 |
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| ID | 5712481 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Dinoroseobacter shibae DFL 12 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009952 |
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| Strand | - |
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| Start bp | 3603596 |
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| End bp | 3604171 |
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| Gene Length | 576 bp |
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| Protein Length | 191 aa |
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| Translation table | 11 |
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| GC content | 58% |
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| IMG OID | 641269352 |
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| Product | RNA polymerase sigma factor |
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| Protein accession | YP_001534757 |
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| Protein GI | 159045963 |
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| COG category | [K] Transcription |
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| COG ID | [COG1595] DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog |
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| TIGRFAM ID | [TIGR02937] RNA polymerase sigma factor, sigma-70 family |
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Plasmid Coverage information |
| Num covering plasmid clones | 44 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 55 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGACACATG GGCAAAGTGC CGAGAATACG CGGCTCGCAG ACTTGCTTGT GCGGATCGCG
AACGAGGACC GCGCCGCTTT CGATGCGCTG TACCGCGCGC TGGAAACTCC GGTCTACCGA
TTTATTCGGT CAAAATTGAA CGATCCCTTC GAGTCAGCCG ACATACTCCA TGACGTCTTT
CTGGAAGTGT GGCGCAGTGC AGGCCGCTTT GAGGGGCGAA GTTCAGTGAA ATCCTGGGTG
TTCGGGATTG CCTACCGGAA AGTGATTGAT GTGTTCAGAA AGTCAGCGCG TACCGACTTG
ACCGACAGCT TTGAGGAGGA GGCCGATACC GACCCGAACC CCGAGCAGTG TCTGGCCACG
GCCGAGAACA GTGCCCATCT GCTCTTTTGC ATGGAAACGT TGAAGCTCGA CCAGCGCGCC
GCGATCCAAC TCGCATTCTT CGAAGATCAG GGATACCGCG AGATTGCGGC GGCCCTGGAC
GTTCCCGAAG GCACGGTGAA AACCCGCATT TTCCACGCCA AGAAGCTCTT GATGCGGTGC
CTCGAGGGGC GGCGTGTAAC GATGGGGGAC GTCTGA
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| Protein sequence | MTHGQSAENT RLADLLVRIA NEDRAAFDAL YRALETPVYR FIRSKLNDPF ESADILHDVF
LEVWRSAGRF EGRSSVKSWV FGIAYRKVID VFRKSARTDL TDSFEEEADT DPNPEQCLAT
AENSAHLLFC METLKLDQRA AIQLAFFEDQ GYREIAAALD VPEGTVKTRI FHAKKLLMRC
LEGRRVTMGD V
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