Gene Dshi_3420 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagDshi_3420 
SymbolglpK 
ID5712478 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameDinoroseobacter shibae DFL 12 
KingdomBacteria 
Replicon accessionNC_009952 
Strand
Start bp3599365 
End bp3600924 
Gene Length1560 bp 
Protein Length519 aa 
Translation table11 
GC content64% 
IMG OID641269349 
Productglycerol kinase 
Protein accessionYP_001534754 
Protein GI159045960 
COG category[C] Energy production and conversion 
COG ID[COG0554] Glycerol kinase 
TIGRFAM ID[TIGR01311] glycerol kinase 


Plasmid Coverage information

Num covering plasmid clones37 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones50 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
TTGGATCGAC AGCGCGGGCA GTTCCTCCTA AACCTGAGGG CGCTGAAGCC ACGACCGGGG 
GAGGGAACCG TGCGCCACGT GCTCGCCATT GACCAAGGCA CAACTTCGAG CCGCGCCATC
GTCTTTGACG CGGATATGAA CATCGTCTCG ATCGCGCAGG AAGAATTTGC GCAGCATTAT
CCCGATAGCG GCTGGGTGGA ACACGATCCC GAGGACTTGT GGGATACGGT ATTGCGGACC
TGTCGGAATG TGCTCGAAAG GACCGGGCTG GCTGCTACGG ACCTCGCCGG GATCGGGATC
ACCAACCAGC GCGAGACGAC CGTGGTTTGG GACAAGTCCA CCGGCAAACC CATCCACAAC
GCGATCGTCT GGCAAGACAG GCGCACTGCC CCCTTCTGCG CCGAATTGCG CAAGGCTGGG
CATGATGCAC TGATCACGGC GCAGACCGGC CTTCTGGCAG ACCCGTATTT CTCAGGCACC
AAGCTGAAAT ACATTCTCGA TACCGTGGAG GGCGCGCGCG ACCGTGCCAA GGCAGGGGAG
CTTTTGTTCG GGACCGTCGA CAGTTTCCTC ATCTGGCGGC TGACGAATGG GGCCGCCCAT
GTCACCGACG CAACCAACGC GGCGCGCACC ATGCTCTACG ACATCCACAA GGGCGCTTGG
AGCGCAGAGA TCTGCACGCT GTTCGATATC CCCCTCGGGA TGCTGCCGCA GGTGCATGAC
TGCGATGCAG AGTTCGGGAC CTGCACACCC GAGCATCTGG GCGGCGCGGT TCCGATCCTC
GGCGTGGCCG GGGACCAACA AGCCGCCACC ATAGGGCAGG CCTGCTTTGA GCCGGGGATG
CTGAAGTCGA CTTATGGAAC GGGGTGCTTT GCGCTTTTGA ACACGGGCGA AGCACCGGTC
ACCTCGACCA ACCGGCTTCT CACGACAATC GCCTACCAGC TCGACGGAAA ACCAACCTAT
GCGCTCGAAG GCTCGATTTT CGTGGCCGGT GCGGTGGTGC AATGGCTCCG CGACGGGCTG
AAATTGATCG CCAACGCGTC CGAGACGCAG CCGCTGGCCG AGGCCGCCGA TCCCCATGAT
CCCGTGATCC TCGTGCCAGC CTTCACCGGC CTCGGGGCGC CCTACTGGAA TGCGGAGTGT
CGCGGGGCGG TCTTTGGCCT CTCGCGCGGG TCGGGTCCGG AAGAGTTCGC CCGCGCCGCC
CTAGAAAGCG TCGGTTATCA GACCCGCGAC CTGCTGGAAG CCATGCATAA GGACTGGTCC
GATGCCCGCG AAGGGCAACC GACCCTGCGG GTGGATGGTG GCATGACCGC AAGCGACTGG
ACCATGCAAT TCCTCGCCGA CATCATCGAC GCGCCAGTCG ACCGTCCGAA GATCACGGAA
ACCACCGCGC TGGGTGTCGC CTGGCTCGCC GGGCAGAAGG CCGGGCTGTA CCCGGATCGC
GCGGGCTTTG CAGCCAACTG GGCTCTGGAT CAGCGGTTCG AGCCCAAGAT GGACGCCACC
ACACGCGATA CGAAATACGC AGCCTGGAAA CGCGCCGTCG CCGCCGTGCA ACAAGCCTGA
 
Protein sequence
MDRQRGQFLL NLRALKPRPG EGTVRHVLAI DQGTTSSRAI VFDADMNIVS IAQEEFAQHY 
PDSGWVEHDP EDLWDTVLRT CRNVLERTGL AATDLAGIGI TNQRETTVVW DKSTGKPIHN
AIVWQDRRTA PFCAELRKAG HDALITAQTG LLADPYFSGT KLKYILDTVE GARDRAKAGE
LLFGTVDSFL IWRLTNGAAH VTDATNAART MLYDIHKGAW SAEICTLFDI PLGMLPQVHD
CDAEFGTCTP EHLGGAVPIL GVAGDQQAAT IGQACFEPGM LKSTYGTGCF ALLNTGEAPV
TSTNRLLTTI AYQLDGKPTY ALEGSIFVAG AVVQWLRDGL KLIANASETQ PLAEAADPHD
PVILVPAFTG LGAPYWNAEC RGAVFGLSRG SGPEEFARAA LESVGYQTRD LLEAMHKDWS
DAREGQPTLR VDGGMTASDW TMQFLADIID APVDRPKITE TTALGVAWLA GQKAGLYPDR
AGFAANWALD QRFEPKMDAT TRDTKYAAWK RAVAAVQQA