Gene Dshi_3417 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagDshi_3417 
Symbol 
ID5712475 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameDinoroseobacter shibae DFL 12 
KingdomBacteria 
Replicon accessionNC_009952 
Strand
Start bp3594961 
End bp3596388 
Gene Length1428 bp 
Protein Length475 aa 
Translation table11 
GC content65% 
IMG OID641269346 
Producthypothetical protein 
Protein accessionYP_001534751 
Protein GI159045957 
COG category[S] Function unknown 
COG ID[COG4223] Uncharacterized protein conserved in bacteria 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones27 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones48 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
GTGTCAGATC CGAAGACCCC AAAAGACACC CCGGAAAATC AGGTTTCGGA CACAGATCAA 
CCTCAGGAGA GCCCGAAGCC CGACACGGAC ACCCCCGAGA CAGACCAGAT TGAAGACGCC
GAAATCCTGG ACGAACAGCC CGGCGAAGTG GACACCGCCA AAGACAGGAA TAGCGAGACT
GCGCAGGACC CGGTCGAGCC TGTCGGCGAG ACCAGCGCCA GCGACGAGAC CACGTCCGAG
GCTGCGCGCA ATGACACGGA CGCGGACACC GCGGCAACCA TGGAAGAGAC ACGAGCCGAC
GAGATAGATC GGAGCCATGA GACCCCGTCC TCAGACCCCG AACCCGCCTC CGAGCCGCAA
GCAGCCGAAC CGGTGGAGCG AGTCGTCGAA AAGAAGGGGG GCTTCATGGG CCCATTCCTC
GGCGGGGTCG TCGCGGCCGG CATAGGGTTC GGTCTGTGCT ATTACCTCGT GGATCAGGGC
ATTCTCGCGT CCGGTGACCC AGACCCCTTC GCAGCGGAAC GCGCGCAAAT CAGCAACCTC
GAAAACCAGA TCGCGGCGAT GCAGAGCGAG ATCGCAGCGG CAATAGAGGC TGGCAGCGAG
GATCCTCGGA TGGACGCAGT GGTCGGGTCG GTTGAATCAG TCGAAACAGC CCTGGCGGAG
ATTCAGGGCG AAGTCGGCGC GGTTCAGTCC GAGATTTCGG CGCAGTCGGA CATTCTCGCA
AATCTCGAAT CGCAAATGGA GGCGATCGCT GCCCTGCCCG AAGGCACCGG CTCTGCCGAC
ACCGCTGCCA TGGCGGCGTT GCAGGCGACT TTGGCGCAAC AGCAAGCCGA GAACGAGGCA
ATGCAGGCCC AGCTGGCCGA GATGGCCGCC GCCGCAGAGG CGGAAATGGA GCAGGTCCGC
GCCCAAGCGG GTGCCCTGCA AAACGAAACG CAAGCGGCAG TCGATGCAGC CACCAACCGC
GCGGCGCTGG CGAATATCGC CGCCGCACTG GAAAACGGTG CACCCCTTGC CGCTTCGCTG
GACAACCTCA CGGTGGAAGC GCCCGAGGCG CTCTCGGCAG TATCAGCTTC CGGGGTCGAA
ACGCTTCTGG ACCTGCAACG GCAATTCCCG GCAGCGGCGC GGGCTGGCTT GGCGGAGTCG
CTGAAAGCCA CGGTCAGTGA CGATCCGGTT GACCGTGCCG TAGCGTTCCT TCGGGCACAG
GTCGGTGCTC GGTCGCTTGA GCCGCGGGAG GGCGATGACC CGGATGCCGT CCTGTCACGG
GCACAAGAAG CCGTCAGCGC CGGGCAGCTC GAAGCCGCGC TTGCCGAGAT CTCCACACTT
CCCGACGCCG GTCAGGCCGC AATGGCGCCT TGGATCGGGG CCGCCGAGGC CCGTGTCGCC
GCGCTCGCCG CGTTCGACAC GCTGGCCGCT GAACTGAACT CCAACTGA
 
Protein sequence
MSDPKTPKDT PENQVSDTDQ PQESPKPDTD TPETDQIEDA EILDEQPGEV DTAKDRNSET 
AQDPVEPVGE TSASDETTSE AARNDTDADT AATMEETRAD EIDRSHETPS SDPEPASEPQ
AAEPVERVVE KKGGFMGPFL GGVVAAGIGF GLCYYLVDQG ILASGDPDPF AAERAQISNL
ENQIAAMQSE IAAAIEAGSE DPRMDAVVGS VESVETALAE IQGEVGAVQS EISAQSDILA
NLESQMEAIA ALPEGTGSAD TAAMAALQAT LAQQQAENEA MQAQLAEMAA AAEAEMEQVR
AQAGALQNET QAAVDAATNR AALANIAAAL ENGAPLAASL DNLTVEAPEA LSAVSASGVE
TLLDLQRQFP AAARAGLAES LKATVSDDPV DRAVAFLRAQ VGARSLEPRE GDDPDAVLSR
AQEAVSAGQL EAALAEISTL PDAGQAAMAP WIGAAEARVA ALAAFDTLAA ELNSN