| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dshi_3416 |
|---|
| Symbol | hemD |
|---|
| ID | 5712474 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Dinoroseobacter shibae DFL 12 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009952 |
|---|
| Strand | + |
|---|
| Start bp | 3594171 |
|---|
| End bp | 3594887 |
|---|
| Gene Length | 717 bp |
|---|
| Protein Length | 238 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 63% |
|---|
| IMG OID | 641269345 |
|---|
| Product | uroporphyrinogen-III synthase |
|---|
| Protein accession | YP_001534750 |
|---|
| Protein GI | 159045956 |
|---|
| COG category | [H] Coenzyme transport and metabolism |
|---|
| COG ID | [COG1587] Uroporphyrinogen-III synthase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 29 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 49 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGTCACAC AACCGCCGCT GCCTGTTCTG CTCACGCGCC CACGGGCGCA ATCGGAACAG
TTTGCTGCGA CGTTGCCGCC TGTCCTGCGG CCTGTCATCT CCCCGCTGCT GCACATCCTT
CATCTCGACG ATTTGCCGCC AGCCCCCGAG ACAGCGACGC TCATCTTTAC CTCCGGCAAT
GGTGTCACGG CCTATGCGAC GCAACACCCG GGCATTGGGC AGTCCGCGCT CTGCGTCGGG
ACAAAGACGA CTGCGATCGC GCGCGATCTG GGGTTCGACG CCATCTCGGC GGAGGGGGAC
GCCCGTGCCA TTCTGGACCT CGCCGCTGCA TACCCCGGGC CCTTCGTCCA TGTTCGCGGC
AAGCATACGA CCGGCGATAT TGCGGGCGCA TTGCGTGATC TGGGCAAGGA GGTTGCAGAG
ATCATCGCCT ATGATCAGAC GCCCGTTGAG CTGAGCGAAA CGGCGCGCGC AATCCTCGAA
GGACCCTGCG CCGTGCCACT TTTCTCGCCC CGAACGGCCT GCTTGTTCAC TAACGCCTGC
CCGACGGCCC GCACAGCGCA GATCATCGCA ATGAGCCCAG CGGTTGCAGA ACAACTCCCC
GAACACGCCT ATAGCGGGAT AAGTATCCTC GAAAAGCCCA ATGCTGCGGC AATGCGGGAC
GCTCTTTTGG CATATGCAGG GGGCAATCAT CTTGAGGCGG GCAGGACCTC TGGCTAG
|
|---|
| Protein sequence | MVTQPPLPVL LTRPRAQSEQ FAATLPPVLR PVISPLLHIL HLDDLPPAPE TATLIFTSGN
GVTAYATQHP GIGQSALCVG TKTTAIARDL GFDAISAEGD ARAILDLAAA YPGPFVHVRG
KHTTGDIAGA LRDLGKEVAE IIAYDQTPVE LSETARAILE GPCAVPLFSP RTACLFTNAC
PTARTAQIIA MSPAVAEQLP EHAYSGISIL EKPNAAAMRD ALLAYAGGNH LEAGRTSG
|
|---|
| |