| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dshi_3411 |
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| Symbol | cycK |
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| ID | 5712469 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Dinoroseobacter shibae DFL 12 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009952 |
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| Strand | - |
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| Start bp | 3589195 |
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| End bp | 3591189 |
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| Gene Length | 1995 bp |
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| Protein Length | 664 aa |
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| Translation table | 11 |
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| GC content | 62% |
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| IMG OID | 641269340 |
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| Product | cytochrome c-type biogenesis protein CycK |
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| Protein accession | YP_001534745 |
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| Protein GI | 159045951 |
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| COG category | [O] Posttranslational modification, protein turnover, chaperones |
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| COG ID | [COG1138] Cytochrome c biogenesis factor |
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| TIGRFAM ID | [TIGR00353] c-type cytochrome biogenesis protein CcmF |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 0.0276994 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 48 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGATCCCTG AGATTGGCAA TTTCGCCCTG ATGCTCGCGC TGGCCGCGGC ACTGGTGCAA
AGCGTGCTTC CCATGGTGGG GGCCGCGCAA CGCAATGTTC TGTGGATGCA GTCGGCGGTG
ACAACCGCAC TGATCCAGTG CGGACTTTTG GCGGTCGCGT TCGCGGCGCT GATGCGGTCG
TTCATCGTAA GCGACTTCAC GGTCGTGAAC GTTGTTGCAA ACTCCCATTC TCTGAAACCG
ATGATCTACA AGGTTGCGGC CACCTGGGGG TCCCATGAAG GCTCACTTCT TCTGTGGGTG
CTGATTCTGG CGATCTTCGG GGCCGGTGTC GCAGTGCTGG GCAAGAACAT CCCTGCCGAG
TTGCGCGCAC GCACCTTGTC TGTGCAGGCC TGGATCAGCG TCGGCTTCCT GTCCTTCATG
ATCTTTACAT CAAACCCGTT CGATCGCATG TTCCCGGCGC CTTTGAATGG CAATGACCTG
AACCCGCTGC TGCAGGATAT CGGTCTCGCC CTGCACCCGC CGCTTCTATA TCTCGGCTAT
GTGGGCTTCT CGATCGTGTT CTCCTTCGCG GTCGCGGCGC TGATCGAGGG TCGTGTCGAT
CCGGCTTGGG CGCGTTGGGT CCGTCCGTGG ACACTGGCGG CCTGGGTCAG CCTGACGGGC
GGAATCGCGC TTGGCTCCTG GTGGGCGTAC TACGAGCTCG GCTGGGGCGG CTGGTGGTTT
TGGGACCCGG TGGAAAACGT GTCCTTCATG CCGTGGCTTC TGGGAACTGC CCTGCTGCAC
TCGGCCATCG TGACCGAGAA ACGCGATACA TTCAAAAGCT GGACGATCCT GCTGGCGATC
CTGACCTTCT CGCTCTCCCT CTTGGGCACG TTCATCGTGC GCTCGGGGCT GCTGACCTCG
GTTCATGCCT TCGCGGTCGA TCCGGAGCGG GGGGTCTATA TCCTCGGGCT GCTCTTCGTC
TCCATCGGCG GGTCGCTGGC GCTATATGCT TGGCGGGCAC CGCAACTCGA AGGGGGCGGT
CTGTTCACCC CGATCTCCCG CGAGGCGGGT CTGCTGATCA ACAACCTGCT CTTGGCCACG
GCCACGGCGG CGGTTCTGTT CGGTACGCTC TATCCGCTTT TCCTGGAGGC GGTGACCGGC
GACAAGATCT CTGTCGGACC GCCCTTCTTC AACGCGAGCT TCATTCCGAT CATGCTGCCT
CTGGTGTTCA TGATGGGAAT CGGGCCGTTC CTGAGCTGGA AACGCGCGGA CCTGCCCGGG
GTTATGTCCC GTCTGAAGTT CGCCATCGGG CTAGGCCTGA TTGCTGCTCT CTGGGCCTGG
TGGATGGATA CTGACGGTCC GGTCCTGGCG ATCATCGCCA TGGGCGTGGC CGGATGGCTC
CTGGTGGCGT CGGCGCGCGA ATGGTTGTCT CGCATAAAGG CTGGGGAAGT TCCGCTGGCA
GAAAGCCTGC GCCGGGCGAA GAACCTGCCC CGCGCGGCCC ATGGCATGAC CATCGCCCAT
ATGGGGGTTG CGGTTTTGAT CCTCGGCATG GTCGGATCTT CCGCCTGGAA AACGGAACAG
ATCCTGTTTG CCAGTCCGGG TACCGTGGTC GAGATTGCCG GCTACGAGGT CCGCTTCGAC
AGGGTCGAGC GTGTCCGCGG TCCGAATTAC GTGTCCGACA TGGGGACCCT GACTGCGTTT
CGCGACGGGG AGCAGGTCGC GGTTCTGCAA CCAGAGCGGC GCTGGTACCC GGTGGCCGAA
ATGCAGACCA CCGAGTCCGC CATCAGGTCC ACCCTGGCCG GAGACCTCTA CGTGACCATT
GGCGAGCCGG CGGCGGATCG TGCATCCAAC GAATGGACTT TGCGTATCCT TTTCGAACCT
TTCGTAAACT TCATCTGGAT CGGCACGGTG TTTCTCGTGA TCGGCGGCAC GTTCTCTCTG
ACGGATCGCA GGCTGCGGGT CGGGGCACCC AAGAGCGCGG CACGGCCTCC GATCCAGGCC
ACCCCTGCGG AGTGA
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| Protein sequence | MIPEIGNFAL MLALAAALVQ SVLPMVGAAQ RNVLWMQSAV TTALIQCGLL AVAFAALMRS
FIVSDFTVVN VVANSHSLKP MIYKVAATWG SHEGSLLLWV LILAIFGAGV AVLGKNIPAE
LRARTLSVQA WISVGFLSFM IFTSNPFDRM FPAPLNGNDL NPLLQDIGLA LHPPLLYLGY
VGFSIVFSFA VAALIEGRVD PAWARWVRPW TLAAWVSLTG GIALGSWWAY YELGWGGWWF
WDPVENVSFM PWLLGTALLH SAIVTEKRDT FKSWTILLAI LTFSLSLLGT FIVRSGLLTS
VHAFAVDPER GVYILGLLFV SIGGSLALYA WRAPQLEGGG LFTPISREAG LLINNLLLAT
ATAAVLFGTL YPLFLEAVTG DKISVGPPFF NASFIPIMLP LVFMMGIGPF LSWKRADLPG
VMSRLKFAIG LGLIAALWAW WMDTDGPVLA IIAMGVAGWL LVASAREWLS RIKAGEVPLA
ESLRRAKNLP RAAHGMTIAH MGVAVLILGM VGSSAWKTEQ ILFASPGTVV EIAGYEVRFD
RVERVRGPNY VSDMGTLTAF RDGEQVAVLQ PERRWYPVAE MQTTESAIRS TLAGDLYVTI
GEPAADRASN EWTLRILFEP FVNFIWIGTV FLVIGGTFSL TDRRLRVGAP KSAARPPIQA
TPAE
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