| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dshi_3407 |
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| Symbol | dsbD |
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| ID | 5712465 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Dinoroseobacter shibae DFL 12 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009952 |
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| Strand | + |
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| Start bp | 3584847 |
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| End bp | 3586958 |
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| Gene Length | 2112 bp |
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| Protein Length | 703 aa |
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| Translation table | 11 |
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| GC content | 62% |
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| IMG OID | 641269336 |
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| Product | thiol:disulfide interchange protein DsbD |
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| Protein accession | YP_001534741 |
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| Protein GI | 159045947 |
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| COG category | [C] Energy production and conversion
[O] Posttranslational modification, protein turnover, chaperones |
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| COG ID | [COG4232] Thiol:disulfide interchange protein
[COG4233] Uncharacterized protein predicted to be involved in C-type cytochrome biogenesis |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 17 |
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| Plasmid unclonability p-value | 0.325788 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 47 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACAACTT TGGCAAGGTG CGCGCTTCAC GCGCTCGCGC TCACATGTCT CTGGCTCGCA
TATGCGCTGC CAGGGCAGGC GGCTGAGTCC GAGCCGCATG TTTCGGCAAT ATCGACCGCA
CGCCTCGTGA CAGCCGAAGA CGCGGTCGCG CCGAATGCCC AGTCAATTTC AGCAGCCCTC
GCAATCACGC TGGAGGACTC CTGGAAGACC TATTGGAGGT CGCCAGGCGA AGTAGGCCTG
CCTCCGGAAA TCTCATGGGA AGGCTCGGAA AATATAGCAT CGGTCGAACT TCTCTATCCA
GCGCCAACAC GGTTTCGCGC CTTCGGCATC GAGAATTTCG GTTATGCCGA TGAGGTCAAT
TTTCCGCTCA AAGTGACGCT CGAAGACCCG GGCGCACCGG CAAAACTGTC GGCCAACGTC
AGTATTCTCG TTTGTGCGGA AATCTGTGTA CCAGAGGAGT TCGCACTCGA TCTGGACCTC
GGGACCGGCA CGGGGGTGGA TGCGGCCTCC GCAAACCTGA TCGCCTCGGC CGCCGCGCTC
GTTCCGGAGC CGGCAGATCT CTATGGTGTC ACGCTCGAAG CCGCAGCACT GGCCGATGAT
GGCGCGGCCC TCGTCGTTGC GTTTTCCCGG CGGGGTGGCT GGCAGTCACC TGACATTTTC
CCCGAGATGG GCGAGTATAC TGCCTTCGGG GCTCCGGATG TTCGGATCGA TCCCGAGGGC
GATACCATGT GGGCCCGGCT GCCTGTTTTG TCCGACCCTG TCAGCAGCGA CATGCCACTG
CGCCTGACAT TGACCGATGA CGGAATGGCC GTGGACCTTC CAGAGGTTCC CCTCGTATCC
CAGGTGCCCG CTCCGCCTTT TGAGCCACAG GCCGAAATGA CGGCAGTTTC CGAACTGCTA
TGGATTGCGC TCATCGCCGT GATCGGCGGG CTGATCCTAA ACGTGATGCC ATGCGTGCTG
CCTGTCCTGT CGATCAAGTT CGCCTCAGCG CTGAAGGCCG CGGACCAATC CGCCGCCAGG
GTACGCGGGG GCTTTCTGAT GTCTGCGGCG GGCGTACTGG CCTTTATGTG GCTTCTGGCG
GCCGGCACCC TTGGGGCACG TGCGATGGGG CTTTCGGTGG GATGGGGCCT GCAATTTCAG
AACCCCTACT TCCTGACGGC CATGCTGCTG ATTCTGACGG TCTTTGCCGC GAATCTGGCC
GGTTTGTTCG AAATATCCCT GCCACAAAGC TGGATGACAC GGATGTCCTC GGACAAGGGC
TCCGGATACA CTGGCGACTT CGCCACCGGG GCGTTCGCGG CAGTGCTGGC GACGCCTTGC
TCTGCACCGT TCCTCGGGAC TGCCATCGCA TTCGCGATGG CCGGACGCCC TATCGATATC
GTCGTGATCT TCACCGCCCT CGGGATCGGC CTGGCCCTGC CCTATCTCCT TGTCGCCGCC
GCACCCGGGT TAGTCAGATA TCTTCCGAAG CCGGGGCGCT GGATGCTACT CGTGAAGGCG
GTGCTCGCAG GCCTTTTGAT CCTGACCGCG GCATGGCTAC TCTGGGTGCT CGGCGGTGTG
GCCGGGTCCG CAGCCCTCCT GTGGGTCGCT GCCCTGCTTG CGGTTTTGGT TCTACTTCTG
TCACCCGTGG CGCGCGGAGT GGGAAGAACA CGCGTGGGGC TGGTGCTCGC CACCGTCATT
GCAGCGTTCT TCCTGCCCAT GTCCACGAGC ACACCAGATA CTGCGATGAA TGCAAAGCTC
GACGCCGAGT GGATCGCATT CGAGCGCAGC GATATCCCCA AACGCGTCGC GGCTGGTGAG
ATTGTCTTTG TCGATGTCAC CGCGGACTGG TGCCTGACCT GCAAGGCGAA CAAGGCGTTG
GTACTGGACC GGGAGCCGGT TGCCGGTTTG CTCGCGTCAG AGGCTGTGAC GGCCATGCGT
GCCGACTGGA CCAGACCGGA CGAGAGTATC TCAGCCTATC TCGAAAGCTT TGGACGCTTC
GGCATTCCCT TCAACGTCGT CTACGGGCCC GCTGCTCCAG AGGGCCTGCC GCTGCCTGAA
CTTTTGACGG CAGACATCGT GCAAGACGCG CTTCTTCGCG CTGGCATGAA CCAGATCGCC
CAAGCGGACT GA
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| Protein sequence | MTTLARCALH ALALTCLWLA YALPGQAAES EPHVSAISTA RLVTAEDAVA PNAQSISAAL
AITLEDSWKT YWRSPGEVGL PPEISWEGSE NIASVELLYP APTRFRAFGI ENFGYADEVN
FPLKVTLEDP GAPAKLSANV SILVCAEICV PEEFALDLDL GTGTGVDAAS ANLIASAAAL
VPEPADLYGV TLEAAALADD GAALVVAFSR RGGWQSPDIF PEMGEYTAFG APDVRIDPEG
DTMWARLPVL SDPVSSDMPL RLTLTDDGMA VDLPEVPLVS QVPAPPFEPQ AEMTAVSELL
WIALIAVIGG LILNVMPCVL PVLSIKFASA LKAADQSAAR VRGGFLMSAA GVLAFMWLLA
AGTLGARAMG LSVGWGLQFQ NPYFLTAMLL ILTVFAANLA GLFEISLPQS WMTRMSSDKG
SGYTGDFATG AFAAVLATPC SAPFLGTAIA FAMAGRPIDI VVIFTALGIG LALPYLLVAA
APGLVRYLPK PGRWMLLVKA VLAGLLILTA AWLLWVLGGV AGSAALLWVA ALLAVLVLLL
SPVARGVGRT RVGLVLATVI AAFFLPMSTS TPDTAMNAKL DAEWIAFERS DIPKRVAAGE
IVFVDVTADW CLTCKANKAL VLDREPVAGL LASEAVTAMR ADWTRPDESI SAYLESFGRF
GIPFNVVYGP AAPEGLPLPE LLTADIVQDA LLRAGMNQIA QAD
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