| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dshi_3395 |
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| Symbol | dctM3 |
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| ID | 5712453 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Dinoroseobacter shibae DFL 12 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009952 |
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| Strand | - |
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| Start bp | 3573085 |
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| End bp | 3574533 |
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| Gene Length | 1449 bp |
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| Protein Length | 482 aa |
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| Translation table | 11 |
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| GC content | 60% |
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| IMG OID | 641269324 |
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| Product | TRAP transporter - DctM subunit |
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| Protein accession | YP_001534729 |
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| Protein GI | 159045935 |
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| COG category | [Q] Secondary metabolites biosynthesis, transport and catabolism |
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| COG ID | [COG4664] TRAP-type mannitol/chloroaromatic compound transport system, large permease component |
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| TIGRFAM ID | [TIGR00786] TRAP transporter, DctM subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 41 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 45 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTTTCTTC TGGAAGCACT GGGTCAGTTC ATGACCCTGA ACGAGTTTGC CGTTTTGGCA
ATGTTCCTCG TGTTCATCTA CCTGCTCTTT CGCGGCATAC CGGTGGCTTA CGCCCTCGTA
GGGGTCAGCC TGATCTTTGC GCTGGTGGCC GAGATCTTCC TGGACCCCAA CCGGGCCGCG
TTCCGGGACA TCATCGAGTT CGACCGCACC GGTATCGACT ATCAACGCTT GCAGGTGCTC
TCCGGGCGGC TCTTTGGCAA CATCGTCAAG AACCCGGTCC TTGTGGCTCT GCCGATGTTC
ATCTTCATGG GGCTCATGTT GGACCAGTCC GGCGTGGCAC AGCGGATGAT GCACTCCATG
CAGAAGCTGT TCGGTGGCCT GCGGGGCGGT CTGTCCCTGA CGGTGATGCT GATCGGTATC
ATCCTTGCAG CGTCGACCGG GGTGATCGGC GCGTCCGTGA CCCTGCTTGG CGTCATGGCG
CTGCCTGCGA TGATGCAGCA GAACTACTCC AAGCCGATCG CGACGGGGAC CATCGCCTCA
GCAGGTACAC TTGGCATTCT GATTCCGCCA TCGATCATGC TGGTGATCAT GTCGGACCAG
TTGGCGATCA GCCTCGGTGA TCTGTTCATG GGCGCTCTGT TCCCGGGGCT GATCCTCGGA
GCGCTGTATA TCATCTTCAT CATCGCCTAC GGCCTGATCA ATCCCAAGGC GATGCCTGCT
CCACCCCAGA CCGACGAGGT CGGCTGGGAC GTGGTCAAGG ACGTGCTGTT GGCGGTCGTG
CCGCCGATGT TCCTTATCCT TCTGGTCCTC GGGTCGATCT TCGCGGGCTT CGCCACACCG
ACCGAAGCCT CGGGCCTCGG AGCGCTGGGC GCGACTTTGC TGGCGCTGGC CAATGGTCGA
CTGAACTTCA AGGTTCTGAA GGAGGTGAGC CGCTCCACCC TCAATACGTC GGGTTACATC
GTCGGAATCT TCCTTGCGGC CAACTTCTTC GCGCTCGTAC TGCGTCGCTA CGGCGGGGAC
GAGATCATTC AGGGCTATGT GCTGTCGACC TTCAGCGACC CGTACATGAT CGTTCTGTTC
ATCCTATTCA TCATCTTTCT GCTTGGCTTC CTGCTGGACT GGATCGAGAT CACGATCATC
ATCATGCCGT TGATGTTGCC GATCATCGTG GGCCTGGACC TGGCGGTGCC GGGCTTCGAC
CAGGTGCGGG ATCCGGCGGT TGTGTGGTTT GCGATCCTCG TGGCGGTCAC CTTGCAGACG
AGCTTCCTGA CGCCACCTGT GGGCTTCGCG CTCTTCTATT TGAAGGGTGT CTGTCCGCCG
GGTGTGAGCC TAGGGCACAT CTACAAGGGG ATCATCCCCT TCGTGATGCT GCAGCTCCTG
GGCTTGTTCA TCGTCTTCCA GTTCCCTGCG CTGACCACCT GGCTACCGGC CATTGCCTAC
GCGGATTAG
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| Protein sequence | MFLLEALGQF MTLNEFAVLA MFLVFIYLLF RGIPVAYALV GVSLIFALVA EIFLDPNRAA
FRDIIEFDRT GIDYQRLQVL SGRLFGNIVK NPVLVALPMF IFMGLMLDQS GVAQRMMHSM
QKLFGGLRGG LSLTVMLIGI ILAASTGVIG ASVTLLGVMA LPAMMQQNYS KPIATGTIAS
AGTLGILIPP SIMLVIMSDQ LAISLGDLFM GALFPGLILG ALYIIFIIAY GLINPKAMPA
PPQTDEVGWD VVKDVLLAVV PPMFLILLVL GSIFAGFATP TEASGLGALG ATLLALANGR
LNFKVLKEVS RSTLNTSGYI VGIFLAANFF ALVLRRYGGD EIIQGYVLST FSDPYMIVLF
ILFIIFLLGF LLDWIEITII IMPLMLPIIV GLDLAVPGFD QVRDPAVVWF AILVAVTLQT
SFLTPPVGFA LFYLKGVCPP GVSLGHIYKG IIPFVMLQLL GLFIVFQFPA LTTWLPAIAY
AD
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