| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dshi_3349 |
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| Symbol | ybbB |
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| ID | 5712407 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Dinoroseobacter shibae DFL 12 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009952 |
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| Strand | + |
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| Start bp | 3517036 |
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| End bp | 3518097 |
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| Gene Length | 1062 bp |
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| Protein Length | 353 aa |
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| Translation table | 11 |
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| GC content | 69% |
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| IMG OID | 641269278 |
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| Product | tRNA 2-selenouridine synthase |
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| Protein accession | YP_001534683 |
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| Protein GI | 159045889 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG2603] Predicted ATPase |
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| TIGRFAM ID | [TIGR03167] tRNA 2-selenouridine synthase |
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Plasmid Coverage information |
| Num covering plasmid clones | 23 |
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| Plasmid unclonability p-value | 0.382984 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 38 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCCCATCG CCCTGTCGTC CCTGCCCGAA CTGACCGACC TGCCCCATGA CGAAATCATC
GACGTCCGGT CCCCGGCGGA GTTTGCCGAG GACCATCTGC CGGGTGCGGT CAACCTGCCG
GTTCTGTCGA ACGCGGAGCG GGCCGAGGTC GGCACGGTCT ATGTACAGGA CAGCCCCTTC
AAGGCGCGCA AGATGGGCGC GGCCCTCGTT GCGCGGAACG CGGCCCGGCA TCTGGAGACC
CATCTGGCCG ACAAGCCGGG CGCGTACCGG CCGCTGGTCT ATTGCTGGCG CGGGGGGCAG
CGGTCCGGGT CCTTCGCGGC GATCCTGCAG CAGATCGGCT GGCGCGCCGA GACCTTGCAG
GGCGGCTATC GGAGCTACCG GCGGCTGGTG AACGCGGCGC TCTATGATGC CGAGTTTCCC
TGCCCCGTTG TACTGCTGGA CGGGGATACC GGATCGGGCA AGACCGATAT CCTGAACCTG
CTGCCCGGTC TGGGCTGGCA GGTGCTGGAC CTCGAAGGGA TGGCGCATCA TCGCGGCTCT
CTTCTGGGCG CATATGCCGA AGATCAGCCT GCACAAAAGG GATTCGAGAG TGCGCTGGCG
ATGGCCCTTG CGGCGCTCGA TCCGGCCCGG CCCGTGGTGG TGGAGGCCGA GAGCTCCAAG
ATCGGGCGGA TCAATCTGCC CCCCGTCCTG TGGTCCGCAA TGCGGCGGGC ACCTCGGCTG
GTGCTGTCGG TGCCGCGCGC GGAACGGGCC CGCTACCTGA CGCGGAGCTA CGGCGACCTG
CTGGATCAGC CGGGAGAAAT GGCCGCGCGG CTGAACCCCT TGCGCAAACT GCACGGCCAC
GCCCAGGTCG ACGCCTGGCA GGAGATGGCC GCGGCGGGCG CATTCGAGGC GCTGGCCGAG
GGCCTGATGG CGGTGCATTA CGATCCGCTC TACCGGCGCG GGCGAAAGGG GGCCGAGGGG
CAGGACCTGG CCTTGGGCAA CGGGGCGCTG GCGCAAGAGC GGATGGCAGA GACCGCCGCG
CTGGTGTCGC AGGCGCTGGC GGCGGTTGTC GCCGCGCGTT GA
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| Protein sequence | MPIALSSLPE LTDLPHDEII DVRSPAEFAE DHLPGAVNLP VLSNAERAEV GTVYVQDSPF
KARKMGAALV ARNAARHLET HLADKPGAYR PLVYCWRGGQ RSGSFAAILQ QIGWRAETLQ
GGYRSYRRLV NAALYDAEFP CPVVLLDGDT GSGKTDILNL LPGLGWQVLD LEGMAHHRGS
LLGAYAEDQP AQKGFESALA MALAALDPAR PVVVEAESSK IGRINLPPVL WSAMRRAPRL
VLSVPRAERA RYLTRSYGDL LDQPGEMAAR LNPLRKLHGH AQVDAWQEMA AAGAFEALAE
GLMAVHYDPL YRRGRKGAEG QDLALGNGAL AQERMAETAA LVSQALAAVV AAR
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