| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dshi_3346 |
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| Symbol | |
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| ID | 5712404 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Dinoroseobacter shibae DFL 12 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009952 |
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| Strand | - |
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| Start bp | 3513033 |
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| End bp | 3515378 |
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| Gene Length | 2346 bp |
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| Protein Length | 781 aa |
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| Translation table | 11 |
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| GC content | 64% |
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| IMG OID | 641269275 |
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| Product | multi-sensor hybrid histidine kinase |
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| Protein accession | YP_001534680 |
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| Protein GI | 159045886 |
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| COG category | [K] Transcription
[T] Signal transduction mechanisms |
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| COG ID | [COG0642] Signal transduction histidine kinase
[COG0745] Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box |
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Plasmid Coverage information |
| Num covering plasmid clones | 17 |
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| Plasmid unclonability p-value | 0.570391 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 34 |
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| Fosmid unclonability p-value | 0.852351 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | GTGCAGAGAA AATTAACGTT TCTCTGCAAC ACAGACTCCG TTGACCAGTC GGCGGAGGCC
ATGCCCCAAC CCGCGCCCCA AGCGCAGAAT GCGCGCCAGA AATTCGAGAA CCGGATCAGT
GATGAGGGCC GGTTCGCCGC CTATGCGCGG GGGCGGGTCG GCCATTTCGC TGCCCGGCAG
GTTCTGACCT TGCTTGGTGC GCTGATCCTA TGGGTGCTTG TCAGCCCACA AATAGGTCTT
CTGGCGCTGG CCTTGGCCCT CCTGGGCGAA GCGGTGGATT GCCTGACCCT GTGGGTCCTG
ATCAAACGGC GGAGTTTCGG CCGCGGCGCG CGGATAGTGT CAACCGGTAC TGCAGCTGTC
CAGGCCCTGT CCATCGCGGC CTGCGTCTGG ATCGGATGGC ATGCGACCGC CGGTCCCGAG
GCGCGCTTCT TCGCGGTCGC TTACCTCTGT GGTGCAATCA TAAACGCCAG CCTGGTCTTC
CCTTACAACC GGCGGGCGAC CGAGGCGCGG CTCGTCATTT ACATCCTTGT GATAGCCGTT
CTTTTTGCCT TGGACGGTCT CCAGGGTCGC GGGGGGCGGG GGCAACTCGT CTTCGACTCC
CTCGCCACGC TTCTTTTGCT CTACATGGCG TATTCTTTCG TGTCCTTCGT GCTGCGCAGC
TACACAAAGC GCATCAAGAT GGAGCGGGAA ATGTTGGAGG GTCAGGAACG TCTTGACCGC
TCCTATCAGA CCCTTCGCGC CCGCGAACGG GAGGCCCGGC ACCTCGCCAT GGTCGCGGCG
AATGCCAATG ACAGCGTGAT CGTGACCGAC CGCGCCGGGC ATATCGAGTA CGTCAATGCC
AGCTTCACGC GGGTGACCGG ATACACGGTG GAGGAAGCGC TCGGCCGCAC CCCGGCGGAG
CTTCTCAATG GGCCGAACAC CGACACCGAG GCGATAGAGG CGATCCTCAA CGCGCGCCGG
ACCCATGAGC CCGTTCGGTT GGAGCTGATC AACCGCACAA AATTTGGCAA GGACATCTGG
GTCGAGACGA ACATCACCCC TATGATGGAC AGTGACGGGA ACGTGGTCGG CGAGGTGGCG
ATCGAGCGCG ACATCACCCA GGCCAAGCAG CGCGAACAGG AGCTTGCGGC CGCCAAGACC
GCTGCCGAAG AGGGCGCACG CGCCAAGGCC CAATTCCTCG CCATGATCAG CCACGAGATT
CGGACGCCCC TGAATGGTAT CATCGGCATG TCCGATGTCA TGTTGTCGGG TCCGCTCGAT
CCCGAGCATC GCGGCAATCT GCAAACGATC CTCGCCTCCG GCGAGGGGCT CTTGACCATC
ATCAACGACA TCCTCGACCT GTCCAAGCTT GAAGCCGGCA AGATGGAGAT CGATCAGTTA
CCATTCGATC TCCGCGCTGA ACTCCAGGCC GCGCTGGATC TGGTCCGCCC GCTGGCGAAT
GAGAAGGGGC TGTCGCTGAG CGTTGACGTC AGCGGTCTTC CCGAGGGCCG TATACTTGGC
GATCCGGGCC GCGTGCGGCA GGTGTTTCTC AACCTGATGG GCAATGCCAT CAAGTTTACC
CGGGCAGGCG CAGTGAGCCT GCGCGCCGCC GTGGATACGG GCGCCGCGCC GCCGCGTGTC
ACCCTCGCCG TGCAGGACAC CGGTATCGGC ATTCCTGCCG ATCGGCTCGA CCAGATCTTC
GACGCCTTCG CCCAGGCCGA CAGTGCCACG ACGCGCGACT TCGGGGGCAC GGGCCTTGGC
TTGGCCATCT CGCGGCAACT GACGCAGCAG ATGGGCGGCG ACATCACCGT GACCTCGGTG
CCGGGGAAAG GCTCCTGCTT CACCATGGAG TTCGTCACCG GGCTGGACGT CATGCAACCG
GTTGAGGTCT CGCCGCGCAT CTGCGCCGAT GACGAAGCCG ACCTGCCCGC AAGCCTGCGG
CTCCTGATCG CCGATGACAA TCGCACCAAT CGGCTGTTGC TTGCTAAACT CCTCTCGCCG
CTCAAGGACG GGATGCGGTT CGCCAAGGAC GGGGTCGAAG CAGTCGAAGC CTTCGCCGCC
GACGTGCCGG ACCTGATCCT GATGGATATG TCCATGCCCC GGTGCGACGG GCTCGAGGCC
ACGCGCCGCA TCCGTGCGCT GGAGGCCAGC CGATGCACGA ACGCACCGGT TCCGATCATT
GCCTTGACCG CCAACGCCTT CGCCAGCGAC CGGGAGCGGT GCCTCGCGGC CGGTATGGAT
GGGTTCCTGA CCAAGCCGAT CCGGCGCAAC GACCTCTTGA GGACCATTGC AAGGGCCACG
CGAGATTCTG CAATTGCCCC GGACAACGCT GCCCAACCGC CCCCCCGACA CTCCGCCGCG
GTCTAG
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| Protein sequence | MQRKLTFLCN TDSVDQSAEA MPQPAPQAQN ARQKFENRIS DEGRFAAYAR GRVGHFAARQ
VLTLLGALIL WVLVSPQIGL LALALALLGE AVDCLTLWVL IKRRSFGRGA RIVSTGTAAV
QALSIAACVW IGWHATAGPE ARFFAVAYLC GAIINASLVF PYNRRATEAR LVIYILVIAV
LFALDGLQGR GGRGQLVFDS LATLLLLYMA YSFVSFVLRS YTKRIKMERE MLEGQERLDR
SYQTLRARER EARHLAMVAA NANDSVIVTD RAGHIEYVNA SFTRVTGYTV EEALGRTPAE
LLNGPNTDTE AIEAILNARR THEPVRLELI NRTKFGKDIW VETNITPMMD SDGNVVGEVA
IERDITQAKQ REQELAAAKT AAEEGARAKA QFLAMISHEI RTPLNGIIGM SDVMLSGPLD
PEHRGNLQTI LASGEGLLTI INDILDLSKL EAGKMEIDQL PFDLRAELQA ALDLVRPLAN
EKGLSLSVDV SGLPEGRILG DPGRVRQVFL NLMGNAIKFT RAGAVSLRAA VDTGAAPPRV
TLAVQDTGIG IPADRLDQIF DAFAQADSAT TRDFGGTGLG LAISRQLTQQ MGGDITVTSV
PGKGSCFTME FVTGLDVMQP VEVSPRICAD DEADLPASLR LLIADDNRTN RLLLAKLLSP
LKDGMRFAKD GVEAVEAFAA DVPDLILMDM SMPRCDGLEA TRRIRALEAS RCTNAPVPII
ALTANAFASD RERCLAAGMD GFLTKPIRRN DLLRTIARAT RDSAIAPDNA AQPPPRHSAA
V
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