Gene Dshi_3342 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagDshi_3342 
Symbol 
ID5712400 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameDinoroseobacter shibae DFL 12 
KingdomBacteria 
Replicon accessionNC_009952 
Strand
Start bp3509061 
End bp3509483 
Gene Length423 bp 
Protein Length140 aa 
Translation table11 
GC content68% 
IMG OID641269271 
Productpeptidyl-tRNA hydrolase domain protein 
Protein accessionYP_001534676 
Protein GI159045882 
COG category[J] Translation, ribosomal structure and biogenesis 
COG ID[COG1186] Protein chain release factor B 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones34 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones38 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCTCAGGA TCAGCGATAC GATAACCTTG GAGGACTGGG AGATGTCCGA AAGCTTCATG 
CGGGCTTCGG GCCCGGGCGG GCAGAACGTG AACAAGGTGT CCTCCGCGGT CGAGTTGCGC
TTCGAAGCCG CGCGGAGCCC CAACCTGCCC GACCCGGTGA AAGGACGATT GCGACGGCTG
GCCGGGCGGC GCTGGACCAA GGATGGGGCC GTGGTGCTGC AGGTGGACGA GACCCGCAGC
CAGGTGCGTA ACCGCGAGAT TGCCCGGGAC CGGCTGGCGG AGTTGATCCG GGAGGCCCTG
AAGCGACCTG TACGGCGGAT CCCGACCAAG CCCACGCTCG GCTCGAAACG GCGACGGCTG
GCGGCCAAGA CCCAGCGCGG GCAGGTCAAG GCCCTGCGCG GCAAGGTACA GGACGGCGAA
TGA
 
Protein sequence
MLRISDTITL EDWEMSESFM RASGPGGQNV NKVSSAVELR FEAARSPNLP DPVKGRLRRL 
AGRRWTKDGA VVLQVDETRS QVRNREIARD RLAELIREAL KRPVRRIPTK PTLGSKRRRL
AAKTQRGQVK ALRGKVQDGE