| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dshi_3341 |
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| Symbol | rimK |
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| ID | 5712399 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Dinoroseobacter shibae DFL 12 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009952 |
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| Strand | + |
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| Start bp | 3507600 |
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| End bp | 3509015 |
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| Gene Length | 1416 bp |
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| Protein Length | 471 aa |
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| Translation table | 11 |
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| GC content | 65% |
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| IMG OID | 641269270 |
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| Product | ribosomal protein S6 modification protein |
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| Protein accession | YP_001534675 |
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| Protein GI | 159045881 |
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| COG category | [H] Coenzyme transport and metabolism
[J] Translation, ribosomal structure and biogenesis
[O] Posttranslational modification, protein turnover, chaperones |
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| COG ID | [COG0189] Glutathione synthase/Ribosomal protein S6 modification enzyme (glutaminyl transferase)
[COG4067] Uncharacterized protein conserved in archaea |
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| TIGRFAM ID | [TIGR00768] alpha-L-glutamate ligases, RimK family |
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Plasmid Coverage information |
| Num covering plasmid clones | 31 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 38 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTCCGAAA CGATCATCCT GGGATGGGAA GAATGGGTGA GCGCGCCGGG ACTGGGCCTG
CCTGCACTCA AGGCGAAGGT GGATACCGGC GCGCGGACCT CGGCGCTGCA TGCGTCGGTG
ATCGAGCCGT TCGGGCCGCC GGATGCTCCG CAAGTGCGGT TCCTGATCCA GCCTGATCCG
GACAACCCGG GGCTGGAGAT CACCTGTTCC GCCCCGGTGA CGGATCGGCG CAACGTGACC
AGTTCGAACG GCGAGACGGA GTTGCGCTTT GTCATCCAGA CCGAGCTGCA GATCGGCGAC
CGGCGATGGC CGGTGGAGAT GACCCTGACG AACCGGGACC AGATGGCCTA CCGGATGTTG
TTGGGCCGAA CCTCGATCAC CGAAGGCATG CAAGTCGACC CCAACAGTTC GTTCGTGCAG
CCGGAGTTGA GCTTCGATCT CTACAAGGCG ATCCCGCGCA AACGGCCGAC CAAGCGCCCC
CTGCGCATCG CCCTGCTGAC CCGGGAGCCC GACAACTATT CCAGCAAGCG ATTGATCGAG
GCCGCTGAAG CGCGCGGCCA CGTGATCGAG ACCATCGACA CCACGCGCTG CTACATGCGG
ATTGGCGGCG TCGCGCCGGA AATCCATTAT GACGGCAAGG TCCTGCCCCG GTTCGATGCG
GTGATCCCGC GGATCGGGGC CTCGGTCACC TCGTACGGCA TGGCGGTGCT GCGACAGTTC
AAAGGGACCG GGGCCTACTG CCTGAACTCG GCCGATGCGA TCGGGCGGTC ACGGGACAAA
CTGCTCGCAC ATCAGATCCT GTCCCAGGCG CAGATCCGGA TGCCGGTGAC CGCCTTCGCC
GCCTCACCCA AGGATACCAA GGATCTGGTC GGGTTGGCGG GGGGTACGCC GCTGGTGGTC
AAGCTGCTGG AAAGTACGCA GGGGCGCGGC GTCGTTCTGG CCGAGACGCG CAAGGCGGGC
GAAAGCCTGA TCGACGCCTT CCGGGGGCTG AACGCGAGTT TCCTGGTGCA GGAATTCGTG
GCCGAGGCTG CAGGTTCGGA CCTGCGATGT TTCGTGGTGG GCGGCAAGGT CGTGGGCGGC
ATCAAGCGCA CCGCGGCGGA AGGCGAGTTT CGGTCGAACC TGCACCGGGG CGGATCGGCG
AAATCCGTGC GCCTGACCAA GGCGGAGCGC GACGTGGCAA GACGTGCGGC GCGGGAATTG
GGGTTGCAGG TCGCCGGCGT GGATATCTTG CAGAGCTCGG ACGGGCCGAA GGTCCTGGAG
GTGAACTCCT CCCCCGGGTT GCAGGGGATC GAGACCGCCA CGGGCAAGGA TATCGCCACC
ATGATGATCA TGCATCTGGA GGCGCAGGTC CGTCCCTTGG CACAGTTACG CGAAGGCGGA
CTCCGCAAGC CGAAATCCGG CAAGCGGCTC GCCTGA
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| Protein sequence | MSETIILGWE EWVSAPGLGL PALKAKVDTG ARTSALHASV IEPFGPPDAP QVRFLIQPDP
DNPGLEITCS APVTDRRNVT SSNGETELRF VIQTELQIGD RRWPVEMTLT NRDQMAYRML
LGRTSITEGM QVDPNSSFVQ PELSFDLYKA IPRKRPTKRP LRIALLTREP DNYSSKRLIE
AAEARGHVIE TIDTTRCYMR IGGVAPEIHY DGKVLPRFDA VIPRIGASVT SYGMAVLRQF
KGTGAYCLNS ADAIGRSRDK LLAHQILSQA QIRMPVTAFA ASPKDTKDLV GLAGGTPLVV
KLLESTQGRG VVLAETRKAG ESLIDAFRGL NASFLVQEFV AEAAGSDLRC FVVGGKVVGG
IKRTAAEGEF RSNLHRGGSA KSVRLTKAER DVARRAAREL GLQVAGVDIL QSSDGPKVLE
VNSSPGLQGI ETATGKDIAT MMIMHLEAQV RPLAQLREGG LRKPKSGKRL A
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