| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dshi_3330 |
|---|
| Symbol | yfdW1 |
|---|
| ID | 5712387 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Dinoroseobacter shibae DFL 12 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009952 |
|---|
| Strand | + |
|---|
| Start bp | 3494201 |
|---|
| End bp | 3495436 |
|---|
| Gene Length | 1236 bp |
|---|
| Protein Length | 411 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 67% |
|---|
| IMG OID | 641269258 |
|---|
| Product | formyl-CoA transferase |
|---|
| Protein accession | YP_001534664 |
|---|
| Protein GI | 159045870 |
|---|
| COG category | [C] Energy production and conversion |
|---|
| COG ID | [COG1804] Predicted acyl-CoA transferases/carnitine dehydratase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 39 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 37 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACCGAAC AAGCTCAAGG CCCCCTCAAA GGCATGAAGG TGATCGAACT GGCGCATATC
ATGGCCGGGC CGGTCTGCGG CATGATGCTG GCCGATATGG GCGCGGATGT GATCAAGGTC
GAAAAGCCCG ATGGCGATGA CAGTCGGCGT TTCCTGCCCC CCGACATCAA CGGCGAGTCC
GCGGCTTACA TGATGATGAA CCGGGGCAAG CGGGGGATTT CCCTGAACCT CAAGGACCCG
GACGCGGTGG AGGTTCTGCA CGCCCTTCTG CGCGATGCCG ATGTGGTGAT CGAGAATTAC
CGCATGGGCA CGATGGAAAA GCTCGGCCTC GGCTACGAGA CCCTGCGCAA GGAAAACCCG
CGCCTGATCT ATTGCGAGAT CTCGGGGTTT GGGCGCACGG GGCCCTATGC CCATCGCGGG
GGGTTTGATT TGATCGCGCA GGGCATGTCG GGGCTGATGT CGATCACCGG CGAGGGTCCG
GGGCGGCCCC CGGTGAAGCC CGGCGCACCG ATCTCGGACA TCACCAGCGG GATCGTGGCC
GCGATGGGGG TCAACGCGGC CTATGCCCAT GCCCTGCGGA CCGGACAGGG GCAGAGGGTG
GACACCAGCC TCTTCGAAGC GGCGATCACC CAGACCTATT GGCAATCGGC GATTGCCTTT
GCCACGGGGA CCGCGCCGGA GCCCGAAGGC TCCGCCCATC CGATCAACGC GCCCTACCAG
GCGTTTCACA CCGCCGATGG CTGGATCAAT ATCGGGGCGG CGAACCAGAA GAACTGGTTG
CGGCTGCTGG AGGTTCTGGA GGCGGATGAG TTGCGCGACG ACCCGCGCTT TGCCACCAAC
CGGGACCGCC GAGTGAACCT GTCTGAATTG GTCCCGCTCC TGGAGGCGCA TTTCGAGACC
CGGACCACGC AGGATTGGCT GGTGCGGATG GAGGAGGCGG GGCTACCCGC GGGGCCGGTC
CTGACAGTGC CGGAGATGCA TGCGGACCCC CAGGCCCGCG CCCGGGAGAT GATCGTCGAG
ACCGAGCATC CGGTGGCCGG GCGGGTGCAG GCGCTGGGCC TGCCGGTGAA ATTTTCCGAA
ACCCCCGGTG CGGTGCAGCG GCCGGCGCCG CTGCTCGGTC AACACAGCCG CGCGGTCCTC
GCGGACCTGG GCTATGACGC TGACGCGGTC GCCCGGCTAA TCGCTTCGGG GGCCGTGATC
TGCCCGGACG GCAGCGCGCA AGCGCGCGCC TCCTGA
|
|---|
| Protein sequence | MTEQAQGPLK GMKVIELAHI MAGPVCGMML ADMGADVIKV EKPDGDDSRR FLPPDINGES
AAYMMMNRGK RGISLNLKDP DAVEVLHALL RDADVVIENY RMGTMEKLGL GYETLRKENP
RLIYCEISGF GRTGPYAHRG GFDLIAQGMS GLMSITGEGP GRPPVKPGAP ISDITSGIVA
AMGVNAAYAH ALRTGQGQRV DTSLFEAAIT QTYWQSAIAF ATGTAPEPEG SAHPINAPYQ
AFHTADGWIN IGAANQKNWL RLLEVLEADE LRDDPRFATN RDRRVNLSEL VPLLEAHFET
RTTQDWLVRM EEAGLPAGPV LTVPEMHADP QARAREMIVE TEHPVAGRVQ ALGLPVKFSE
TPGAVQRPAP LLGQHSRAVL ADLGYDADAV ARLIASGAVI CPDGSAQARA S
|
|---|
| |