Gene Dshi_3324 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagDshi_3324 
Symboldld2 
ID5712381 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameDinoroseobacter shibae DFL 12 
KingdomBacteria 
Replicon accessionNC_009952 
Strand
Start bp3486236 
End bp3489157 
Gene Length2922 bp 
Protein Length973 aa 
Translation table11 
GC content66% 
IMG OID641269252 
ProductD-lactate dehydrogenase 
Protein accessionYP_001534658 
Protein GI159045864 
COG category[C] Energy production and conversion 
COG ID[COG0247] Fe-S oxidoreductase
[COG0277] FAD/FMN-containing dehydrogenases 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones22 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones36 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGGAATGA TGGAGAAATC GCCACTGGCC TCGCGCCTCG CCGGGAAGAT CGAGGGCGAG 
CTGCTCTTCG ACGCCTTCTC GCGCGGGCGC TATGCGACAG ACGCGTCCAT CTATCAGATG
ACCCCGCTCG GCGCGGTGGT CCCAAAATCC CTGGACGACA TCGAAACCGC GCTGGGGGCA
GCGCGCGAAT TGGGCGCCTC GGTCCTGCCG CGCGGGGGCG GCACGTCCCA ATGCGGCCAG
ACGGTCAACC ATTCCCTGGT CCTCGACAAT TCCAAGTATT TCAACCGGAT CCTCGATCTG
GACGTGGCAA ACCGGCGCTG CGTCGTGCAA CCGGGCATCG TGCTGGACGA GCTGAACCGC
GCGTTGAAGC CCCACGGGTT GTGGTTTCCC GTGGATGTCT CCACCGCCTC CCGCGCCACC
ATCGGCGGGA TGGCCGCCAA CAACTCCTGC GGGGGGCGGT CCCTGCGCTA CGGAACCATG
CGCGACAACG TGCTGTCGAT CGAAGCGATC CTCGCGGACG GCACCCGCAC CACCTTCGGC
CCGGTGGATC GCAACGGCGT TCTCGGCAAC GACCCCACCT CGGCCCTGAT CTCCGAAATG
CTGGCACTGG GCGCGCGGGA ACAGGCCGAG ATCGCCGCGC GCTTTCCCAA CATCATCCGG
CGCGTGGGCG GCTACAACAT CGACGCCCTG ACCCCGGATC ATGCGCGCAA CAACATGGCC
CACCTGCTGG TCGGCTCCGA AGGCACGCTG GGCTATTTCA CCGCCATCGA GTTGAAACTG
TCGCCCCTGC AATCGACCAA GGTCACCGGG GCCTGCCATT TCCCGACCTT CCATGCCGCG
ATGGACGCGG CACAACATCT CGTCCCGCTG AAACCGGCCG CGGTGGAGCT TGTGGACGAC
ACGATGATCG CGCTTGCCCG CGACATCCCG ATGTTTCGTC AGACAATCAG TCAATTTGTG
CAGGGCGACC CGGCGGCGCT GCTGCTCGTG GAATTTGCCG AAGGCTCCGA TGCGGCGAAC
GCGGCGAAAC TCGAAGAATT GTCAGACAAA ATGGCCGCGC TCGGCTTCGG CTTCGACCGC
AGCGGCAAGC ACTGGGGCGG TTCGGTCGCC GTGACCGATT TGAAGCTCCA GAACGACATC
GGCGAGGTGC GCAAATCGGG CCTCAACATC ATGATGTCGA TGAAATCCGA GGGCAAACCG
GTCTCCTTTG TCGAGGATTG CGCGGTGGAG CTGCCGGATC TCGCCGCTTA TACTGCCGGG
CTGACCGAGA TCTTCGAGAA ACACGGCACC AAGGGCACCT GGTATGCCCA TGCCTCGGTC
GGCTGCCTCC ATGTCCGGCC GGTGCTGAAC ATGAAGCTCG ACAAGGACGT CAAGACCATG
CGCGCCATCG CGGAAGAGTG CTTCGACCTT GTCGCCCATT ACAAGGGCTC CCATTCCGGC
GAACACGGCG ACGGCATCGT GCGCAGCGAA TTCCACGAGA AGATGTTCGG CCCGCAGATG
GTCGCCAGCT TCAATGAGGT GAAGGACCGC TTCGACCCCA ACCGCCTCTT CAACCCCGGA
AAGATCGTCC AGCCGCCCAA GATGGATGAC CGGCGGCTCT TTCGCTACGG GCCCGACTAC
ACCGTGAAAC CGATGAAAAC CGCGCTTGAC TGGTCCGCAT GGCCCGGGGC CGGGGGCGGG
TTCCAGGGCG CGGTAGAGAT GTGCAACAAC AACGGCGCCT GCCGCAAGCT GAAGGGCGGG
GTGATGTGCC CCTCCTACCG GGTGACCCGG AACGAGCGGG ACGTTGTGCG CGGGCGGGCC
AACTCCCTCA GGCTGGCGAT CTCGGGGCAG CTCGGGCCGG ATGCCTTTGC ATCCGACGAC
ATGGTCTCGG CCATGAAACT GTGCGTGTCC TGCAAGGGCT GCAAGCGCGA ATGTCCGACC
GGCGTGGACA TGGCCAAGAT GAAGATCGAG GTGCTGGCCG CCCGGGCCGA GAAACACGGG
CTGTCCTTCC ACGACAAGCT GGTGGGTTAC ATGCCCGCGT ATGCCCCGTT CGCCGCGAAA
CTGCCCTGGC TCGCCAATGC CCGCAACTGG CTGCCCGGGG CGGCGAAGCT GACCGAGCGC
CTGACCGGGT TCGCGGCAAG CCGCAAATTG CCGGCCTGGT CCAATGACCC GTTTCTCGAC
ACGGAGTTCC AGGACGCCGA CCCGGACGTG GTGCTCTGGG CGGATATCTT CAACCGCTAC
TTCGAGCCGG AGAACCTGCG CGCCGCGGGC CGGGTGCTGC GGGCGGCGGG GCTGCGGGTG
GCCGTGGTCC GGCCCGCCGA CGGCAAGGAT CCGCTCGATT GCGGGCGGAC ATACCTCGCC
GTGGGGCTGG TGGAGGAGGC GCGCGCCTCC GCCCGCCGGG CGCTCAAGGC CCTCGTCCCC
CATGCCGAGA AGGGGGTGCC CATCGTCGGG CTGGAGCCCT CGTCGCTCCT GACCCTGCGG
GACGAATGGC CGGTGCTGGT GCCCGGCCCG GAGGCCGATC TCGTGGCCCA GCACGCGCTG
ATGCTGGAGG AGTATCTCGT TCGCAACGAA ATCGCCCTGC CGCTGAAACC CCTCGGCCGA
CCCATCCTGC TGCACGGGCA TTGCCACCAG AAGGCCCATA ACGTGATGCC GGATGTCCAG
AAGACGCTGG CGATGATCCC GCAGGCGGAG GTGTCGGTGG TCGAGACCAG CTGCTGCGGC
ATGGCCGGGG CTTTTGGATA TGGCAAGGAT ACGGTAGAAA CCTCCCTCAA GATGGCCGAG
CTGGACCTGT TGCCCGCGGT GCGGGCCGCG GCGCAGGACG CGCTGGTGGT GGCCGATGGC
ACCTCTTGCC GCCACCAGAT CAAGGACGGC GCCGCGCGGG AGGCGATCCA TGTCGCCCGG
ATCCTGGAGA TGGCGCTCGA TGCCGGTGGA AAGGGAGCCT GA
 
Protein sequence
MGMMEKSPLA SRLAGKIEGE LLFDAFSRGR YATDASIYQM TPLGAVVPKS LDDIETALGA 
ARELGASVLP RGGGTSQCGQ TVNHSLVLDN SKYFNRILDL DVANRRCVVQ PGIVLDELNR
ALKPHGLWFP VDVSTASRAT IGGMAANNSC GGRSLRYGTM RDNVLSIEAI LADGTRTTFG
PVDRNGVLGN DPTSALISEM LALGAREQAE IAARFPNIIR RVGGYNIDAL TPDHARNNMA
HLLVGSEGTL GYFTAIELKL SPLQSTKVTG ACHFPTFHAA MDAAQHLVPL KPAAVELVDD
TMIALARDIP MFRQTISQFV QGDPAALLLV EFAEGSDAAN AAKLEELSDK MAALGFGFDR
SGKHWGGSVA VTDLKLQNDI GEVRKSGLNI MMSMKSEGKP VSFVEDCAVE LPDLAAYTAG
LTEIFEKHGT KGTWYAHASV GCLHVRPVLN MKLDKDVKTM RAIAEECFDL VAHYKGSHSG
EHGDGIVRSE FHEKMFGPQM VASFNEVKDR FDPNRLFNPG KIVQPPKMDD RRLFRYGPDY
TVKPMKTALD WSAWPGAGGG FQGAVEMCNN NGACRKLKGG VMCPSYRVTR NERDVVRGRA
NSLRLAISGQ LGPDAFASDD MVSAMKLCVS CKGCKRECPT GVDMAKMKIE VLAARAEKHG
LSFHDKLVGY MPAYAPFAAK LPWLANARNW LPGAAKLTER LTGFAASRKL PAWSNDPFLD
TEFQDADPDV VLWADIFNRY FEPENLRAAG RVLRAAGLRV AVVRPADGKD PLDCGRTYLA
VGLVEEARAS ARRALKALVP HAEKGVPIVG LEPSSLLTLR DEWPVLVPGP EADLVAQHAL
MLEEYLVRNE IALPLKPLGR PILLHGHCHQ KAHNVMPDVQ KTLAMIPQAE VSVVETSCCG
MAGAFGYGKD TVETSLKMAE LDLLPAVRAA AQDALVVADG TSCRHQIKDG AAREAIHVAR
ILEMALDAGG KGA